Homologs in group_1192

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06890 FBDBKF_06890 100.0 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_04080 EHELCC_04080 100.0 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_04080 NLDBIP_04080 100.0 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_09910 LHKJJB_09910 100.0 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
F4V73_RS01075 F4V73_RS01075 87.7 Morganella psychrotolerans - YbaK/prolyl-tRNA synthetase associated domain-containing protein
PMI_RS03230 PMI_RS03230 69.9 Proteus mirabilis HI4320 - YbaK/prolyl-tRNA synthetase associated domain-containing protein

Distribution of the homologs in the orthogroup group_1192

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1192

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64483 1.83e-69 211 63 0 162 1 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli (strain K12)
P64484 1.83e-69 211 63 0 162 3 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli O157:H7
Q9L4Q7 1.04e-07 52 26 4 160 1 proX Prolyl-tRNA editing protein ProX Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / CCUG 9281 / NCIMB 10654 / HF)
P0AAR4 0.000111 43 25 2 131 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Shigella flexneri
P0AAR3 0.000111 43 25 2 131 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Escherichia coli (strain K12)
P37174 0.000471 42 25 3 135 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_09065
Feature type CDS
Gene ebsC
Product Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
Location 48975 - 49493 (strand: -1)
Length 519 (nucleotides) / 172 (amino acids)

Contig

Accession ZDB_686
Length 191111 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1192
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04073 Aminoacyl-tRNA editing domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2606 Translation, ribosomal structure and biogenesis (J) J Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19055 Ala-tRNA(Pro) deacylase [EC:3.1.1.-] - -

Protein Sequence

MATNAETMSDMTPIFEKLTARLDEHNARYRVVHHASAGKTEEVARVRGTHHGQGAKALVCHIKGNGVRQYVLAILPSDQQADLQALAKKTGGTRASLASPAETAELTQCVFGAIPPFSFHPDLRLVADPMLFERFSELAFNAGSLECSIILNTKDYQRIADPETVSFVRREL

Flanking regions ( +/- flanking 50bp)

TTTTTTGTCCGCTGTTTTTGTTGCCGTAACCTTCTATAATAGGCAGGATATTGGCAACAAATGCAGAGACTATGAGTGATATGACCCCGATTTTTGAGAAACTGACCGCCCGGCTGGATGAACATAATGCCCGCTACCGTGTGGTACATCATGCCTCCGCCGGGAAAACCGAAGAAGTCGCCAGAGTGCGCGGCACACACCACGGTCAGGGTGCCAAAGCACTGGTTTGTCATATCAAGGGAAACGGTGTACGTCAGTATGTTCTTGCGATTCTGCCTTCTGATCAGCAGGCGGATTTACAGGCACTGGCAAAAAAAACCGGCGGCACCCGCGCCTCTCTCGCCAGCCCTGCAGAAACAGCTGAACTGACACAGTGTGTGTTCGGTGCTATCCCGCCGTTCAGCTTTCACCCTGATCTCCGTCTCGTTGCCGATCCGATGTTATTTGAACGTTTCAGTGAGCTGGCCTTTAATGCCGGCAGCCTGGAGTGCTCCATTATTCTGAATACAAAGGACTATCAGCGGATTGCCGATCCTGAAACAGTATCGTTTGTCCGCCGTGAACTTTGATTTTTGCTTGGGAAGGCGCTTATGCAGGACGAACTTTTAGACTCGCTTTA