Homologs in group_1294

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07890 FBDBKF_07890 100.0 Morganella morganii S1 tm-1N ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family
EHELCC_13720 EHELCC_13720 100.0 Morganella morganii S2 tm-1N ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family
NLDBIP_14165 NLDBIP_14165 100.0 Morganella morganii S4 tm-1N ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family
LHKJJB_08685 LHKJJB_08685 100.0 Morganella morganii S3 tm-1N ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family
F4V73_RS13090 F4V73_RS13090 93.1 Morganella psychrotolerans - Tm-1-like ATP-binding domain-containing protein
PMI_RS00735 PMI_RS00735 76.4 Proteus mirabilis HI4320 - Tm-1-like ATP-binding domain-containing protein

Distribution of the homologs in the orthogroup group_1294

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1294

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZAG3 0.0 560 68 1 395 3 YPO3839 UPF0261 protein YPO3839/y0391/YP_3209 Yersinia pestis
A8GL43 8.26e-175 496 62 0 394 3 Spro_4740 UPF0261 protein Spro_4740 Serratia proteamaculans (strain 568)
Q7WHB9 2.76e-167 477 59 3 402 3 BB3289 UPF0261 protein BB3289 Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q7VYV4 3.15e-167 477 59 3 402 3 BP1203 UPF0261 protein BP1203 Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q7W9E3 2.35e-166 475 59 3 402 3 BPP1817 UPF0261 protein BPP1817 Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
A4FLF6 4.11e-155 446 56 3 397 3 SACE_5696 UPF0261 protein SACE_5696 Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)
P55606 1.01e-138 404 51 1 394 3 NGR_a02150 UPF0261 protein y4oU Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q92YY3 1.03e-137 402 53 3 395 3 RA0729 UPF0261 protein RA0729 Rhizobium meliloti (strain 1021)
Q981G1 6.46e-137 400 52 2 396 3 mll9388 UPF0261 protein mll9388 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q98GC6 5.18e-121 359 53 3 388 3 mlr3387 UPF0261 protein mlr3387 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
A7M6E7 3.68e-94 301 42 7 426 1 Tm-1 ToMV resistance protein Tm-1(GCR237) Solanum lycopersicum
A7M6E8 3.19e-93 298 41 7 426 1 tm-1 ToMV susceptible protein tm-1(GCR26) Solanum lycopersicum
Q893M2 1.83e-87 274 41 5 388 3 CTC_01794 UPF0261 protein CTC_01794 Clostridium tetani (strain Massachusetts / E88)
Q8FUQ2 2.76e-49 175 32 9 398 3 BRA1168 UPF0261 protein BRA1168/BS1330_II1159 Brucella suis biovar 1 (strain 1330)
Q8YDP7 2.81e-48 172 31 9 398 3 BMEII0128 UPF0261 protein BMEII0128 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_08235
Feature type CDS
Gene tm-1N
Product ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family
Location 56584 - 57798 (strand: 1)
Length 1215 (nucleotides) / 404 (amino acids)

Contig

Accession ZDB_685
Length 192328 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1294
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06792 Uncharacterised protein family (UPF0261)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5441 Defense mechanisms (V) V ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family

Protein Sequence

MNSNKGAVYIATTLDTKSDEIFYVSELIQRTGLAVKTVDLTTKPGQLTREADVCARDVAACHPDGESAVFCGDRGRAIAAMAVAFERFLAKQNDIAALLGLGGSGGTALITPAMQSLPVGIPKLMVSTMASGDISGYIGASDIAMLYSVTDVSGLNRISRKVLRNAANQIAGAVYFCQEEQVTDKPAIALTMFGVTTPCIQQISKELEADYDCLVFHATGSGGKAMEKLADDHLFDSILDLTTTEVCDYLFGGVLACDEDRFGAIARSQTPYIGSCGALDMVNFGRPSTVPEKYTDRQFYHHNAQVTLMRTTPEENAQMGRWIAEKLNQCHGDVIFIIPEGGFSALDAEGMPFWSPDADRAFIEAFETHYKQTEKRILRKCPYHINDPEFTRFVIDQHQQLRAK

Flanking regions ( +/- flanking 50bp)

TTCTGGTTATGATGCGTTATCAGACATCCGATATCCCTTTGAGGTTAACCATGAACAGCAATAAAGGCGCTGTCTATATCGCCACAACGCTCGATACCAAAAGTGATGAGATTTTTTATGTCAGTGAGCTGATCCAGCGCACCGGCCTGGCTGTAAAGACTGTGGATTTAACCACAAAACCCGGTCAGCTGACCCGGGAAGCGGATGTCTGCGCCCGCGACGTCGCCGCCTGTCACCCTGACGGCGAAAGCGCGGTTTTCTGCGGCGACCGCGGCCGTGCTATCGCGGCAATGGCTGTCGCCTTTGAACGTTTCCTTGCAAAACAAAATGATATTGCAGCACTTCTCGGTTTGGGCGGATCCGGTGGAACGGCACTGATTACACCAGCAATGCAATCCCTGCCTGTCGGCATCCCTAAACTCATGGTTTCCACCATGGCCTCCGGTGATATTTCCGGCTATATCGGCGCAAGCGATATTGCCATGCTCTACTCTGTCACTGATGTCTCCGGCCTGAACCGAATTTCACGTAAAGTTCTCCGTAATGCGGCTAACCAGATTGCCGGGGCGGTTTACTTCTGTCAGGAAGAGCAGGTTACTGATAAACCCGCCATTGCCCTGACTATGTTCGGCGTCACCACACCGTGTATCCAGCAAATCAGCAAAGAACTGGAAGCGGATTACGATTGTCTGGTCTTTCATGCGACCGGCAGCGGCGGTAAAGCGATGGAGAAACTGGCGGATGACCATCTGTTCGACAGTATCCTTGACCTGACCACCACGGAAGTGTGTGACTATCTTTTCGGCGGTGTTCTGGCCTGTGATGAAGACCGTTTCGGTGCTATTGCCCGCTCACAGACGCCGTATATCGGCTCCTGCGGCGCACTGGATATGGTCAATTTCGGCCGCCCGTCCACCGTACCGGAAAAATACACCGATCGTCAGTTTTATCACCACAACGCCCAGGTCACCCTGATGCGTACCACCCCGGAAGAAAATGCACAGATGGGGCGCTGGATTGCGGAAAAACTCAACCAGTGTCACGGTGATGTTATTTTTATCATTCCGGAAGGCGGCTTCTCCGCCCTGGATGCTGAAGGTATGCCTTTCTGGTCGCCGGATGCAGACCGCGCCTTTATTGAGGCGTTCGAAACTCATTATAAACAAACAGAAAAACGTATTTTACGCAAATGCCCGTATCACATTAATGACCCGGAATTTACCCGTTTTGTCATTGATCAACACCAGCAATTACGGGCGAAATAAGGAGACACAAGATGCCACTTTCCCGTGACGCATTACTGAAAAAATTCAAT