Homologs in group_1110

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05900 FBDBKF_05900 100.0 Morganella morganii S1 rcsF Rcs stress response system protein RcsF
EHELCC_08945 EHELCC_08945 100.0 Morganella morganii S2 rcsF Rcs stress response system protein RcsF
NLDBIP_09325 NLDBIP_09325 100.0 Morganella morganii S4 rcsF Rcs stress response system protein RcsF
LHKJJB_08430 LHKJJB_08430 100.0 Morganella morganii S3 rcsF Rcs stress response system protein RcsF
F4V73_RS15995 F4V73_RS15995 68.4 Morganella psychrotolerans rcsF Rcs stress response system protein RcsF
PMI_RS11170 PMI_RS11170 41.0 Proteus mirabilis HI4320 rcsF Rcs stress response system protein RcsF

Distribution of the homologs in the orthogroup group_1110

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1110

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69411 7.37e-26 97 44 4 135 1 rcsF Outer membrane lipoprotein RcsF Escherichia coli (strain K12)
P69412 7.37e-26 97 44 4 135 3 rcsF Outer membrane lipoprotein RcsF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_07980
Feature type CDS
Gene rcsF
Product Rcs stress response system protein RcsF
Location 212493 - 212903 (strand: -1)
Length 411 (nucleotides) / 136 (amino acids)
In genomic island -

Contig

Accession ZDB_684
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1110
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF16358 RcsF lipoprotein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06080 RcsF protein Two-component system -

Protein Sequence

MRVLIISLLALLIAGCSFRQSHSEQEQAQYADMRLKKPAGKKAKSTSAASRVKLYLHPEELLGKPFRDLGVVLGQNCREAANPAQSGIPAARKQMLSRAGKLKADAVLLHQCAVNPAQGCKQLAVCEGTAIKVDDV

Flanking regions ( +/- flanking 50bp)

TTTCATCTGCCCTTACTTTTCTGTTTTGTACAGCCAGAGGATTGTTTTCCATGCGAGTGCTTATTATCAGCCTGCTTGCTCTTCTCATCGCGGGATGCTCTTTCCGTCAGAGTCATTCTGAACAGGAGCAGGCGCAATACGCCGATATGCGGCTGAAAAAACCGGCCGGTAAAAAAGCCAAATCAACATCCGCAGCATCACGCGTCAAACTCTATCTCCACCCGGAAGAACTGCTGGGTAAACCTTTCCGTGACCTTGGTGTGGTTTTGGGTCAGAATTGCCGTGAAGCGGCAAACCCTGCACAGTCCGGTATTCCGGCAGCCCGTAAGCAAATGCTGTCCCGGGCCGGAAAACTGAAAGCAGATGCCGTGTTACTCCACCAGTGCGCCGTGAACCCCGCGCAGGGTTGTAAGCAGCTGGCGGTATGCGAAGGTACTGCGATTAAGGTTGATGATGTCTGAGTTTTCATTTTCGCCCGTGGGGTTTATCCGCTCACCGTGGCAGGAAAAAT