Homologs in group_1043

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05900 FBDBKF_05900 68.4 Morganella morganii S1 rcsF Rcs stress response system protein RcsF
EHELCC_08945 EHELCC_08945 68.4 Morganella morganii S2 rcsF Rcs stress response system protein RcsF
NLDBIP_09325 NLDBIP_09325 68.4 Morganella morganii S4 rcsF Rcs stress response system protein RcsF
LHKJJB_08430 LHKJJB_08430 68.4 Morganella morganii S3 rcsF Rcs stress response system protein RcsF
HKOGLL_07980 HKOGLL_07980 68.4 Morganella morganii S5 rcsF Rcs stress response system protein RcsF
PMI_RS11170 PMI_RS11170 43.3 Proteus mirabilis HI4320 rcsF Rcs stress response system protein RcsF

Distribution of the homologs in the orthogroup group_1043

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1043

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69411 5.54e-28 103 41 3 135 1 rcsF Outer membrane lipoprotein RcsF Escherichia coli (strain K12)
P69412 5.54e-28 103 41 3 135 3 rcsF Outer membrane lipoprotein RcsF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15995
Feature type CDS
Gene rcsF
Product Rcs stress response system protein RcsF
Location 209293 - 209703 (strand: -1)
Length 411 (nucleotides) / 136 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1043
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF16358 RcsF lipoprotein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06080 RcsF protein Two-component system -

Protein Sequence

MRVLIVSLLTFFMVGCSVRETPREPEQPQYADLRLKKPVSKKTKTTSSSSRVRLYTQTEDLLGKPFRDLGVVLGQNCRGAAKSVPASIPAARKQMLRHAGKMKADAVLLHQCEIITSKDCEQLAVCEGTAIKVDDV

Flanking regions ( +/- flanking 50bp)

CTTATTTTGTTTTAATTACTTGTTTTGTATAGCCAGAGGATCCTATTTCCATGCGTGTGCTTATCGTCAGCCTGCTCACTTTTTTTATGGTGGGGTGTTCTGTCCGTGAAACACCCCGAGAACCGGAGCAACCCCAATATGCTGACCTGCGACTGAAAAAGCCGGTAAGTAAAAAAACCAAAACAACATCCTCATCATCCCGGGTCAGGCTCTATACTCAAACGGAAGATCTGCTTGGCAAACCTTTCCGTGACCTGGGCGTTGTTTTAGGTCAGAATTGCCGGGGAGCGGCAAAATCAGTGCCTGCCAGTATTCCGGCTGCCCGTAAACAAATGTTACGTCACGCCGGGAAAATGAAAGCCGATGCCGTGTTACTCCATCAGTGTGAAATAATCACCAGCAAAGATTGTGAACAACTGGCGGTTTGTGAAGGTACTGCGATTAAGGTTGATGATGTCTGAGTTTTCGTTTTCACCCATTGGTTTTATCCGGTCACCCTGGCAGGAGAAAT