Homologs in group_1085

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06165 FBDBKF_06165 100.0 Morganella morganii S1 recC exodeoxyribonuclease V subunit gamma
EHELCC_09210 EHELCC_09210 100.0 Morganella morganii S2 recC exodeoxyribonuclease V subunit gamma
NLDBIP_09590 NLDBIP_09590 100.0 Morganella morganii S4 recC exodeoxyribonuclease V subunit gamma
LHKJJB_08165 LHKJJB_08165 100.0 Morganella morganii S3 recC exodeoxyribonuclease V subunit gamma
F4V73_RS15750 F4V73_RS15750 85.5 Morganella psychrotolerans recC exodeoxyribonuclease V subunit gamma
PMI_RS11430 PMI_RS11430 58.8 Proteus mirabilis HI4320 recC exodeoxyribonuclease V subunit gamma

Distribution of the homologs in the orthogroup group_1085

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1085

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07648 0.0 1187 53 3 1126 1 recC RecBCD enzyme subunit RecC Escherichia coli (strain K12)
P44945 0.0 662 39 18 964 3 recC RecBCD enzyme subunit RecC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57528 2.48e-167 525 26 10 1124 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AB4 9.72e-121 402 23 18 1130 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9B0 4.2e-104 355 25 13 803 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q8K9B0 2.34e-23 111 29 4 247 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P9WIQ5 4.38e-93 325 28 31 1079 1 recC RecBCD enzyme subunit RecC Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIQ4 2.27e-92 323 28 31 1079 3 recC RecBCD enzyme subunit RecC Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A0QS30 4.19e-92 322 28 29 1071 3 recC RecBCD enzyme subunit RecC Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
B9DIT7 2.44e-05 52 24 15 319 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Staphylococcus carnosus (strain TM300)
Q8DPR7 0.000116 50 23 5 171 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q97QQ0 0.000116 50 23 5 171 3 rexB Exonuclease/helicase subunit RexB Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q04KF9 0.000116 50 23 5 171 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
B8ZQ31 0.000119 50 23 5 171 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1)
B1IBR5 0.000123 50 23 5 171 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain Hungary19A-6)
B2IPX4 0.000124 50 23 5 171 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae (strain CGSP14)
B5E4P4 0.000136 50 23 5 171 3 rexB ATP-dependent helicase/deoxyribonuclease subunit B Streptococcus pneumoniae serotype 19F (strain G54)
Q18AP0 0.000201 49 21 17 411 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Clostridioides difficile (strain 630)
A0PY66 0.000319 48 19 14 378 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Clostridium novyi (strain NT)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_07715
Feature type CDS
Gene recC
Product exodeoxyribonuclease V subunit gamma
Location 153198 - 156599 (strand: 1)
Length 3402 (nucleotides) / 1133 (amino acids)

Contig

Accession ZDB_684
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1085
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04257 Exodeoxyribonuclease V, gamma subunit
PF17946 RecC C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1330 Replication, recombination and repair (L) L Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] Homologous recombination -

Protein Sequence

MFTVYHSNDLDLLKDLICHIIDNDKINDPFCPETVLVQSPGMSQWLQISLAEKLGIAANITFPLPATFIWDMFTRVLPDIPKESAFSKGAMTWKLMSLLPQRLDDPDFAPLRHYLDDDGDKRKLHQLSGRIADLFDQYLVYRPDWLTAWENNELIDGLSHNQSWQKCLWRDLQTLTRSLGQPEWHRANLYQRFIDVLNEGDPEIVANLPPRLFICGISALPPVYLQALRALGQHTHIHLMFTNPCQYYWGDLQSPAALRRMLARKPQSYWDKKAVSWFKSDEDAPSLFDFEADGEQNTGNPLLASWGRPGRDNLFFLEDIEEIHAIKAFVDRPADTLLSAVQQDILNLEDGSVVGKNKEEFVTSERRRVIADNDRSLTFHSCHSPQRETEILQDYLLNLLENDPSLTPRDIIVMVADIDSYSPYIQAVFGQGNENRYLPFAISDRKARQAHPVLQAVLTLLELPQSRFTSEHVLSLLEVPAVAQQFGLDESDLPLLRRWVSGSGVRWGLDDHNIESFSLPVFGQNTWKFGLERMLLGYAMAEEEGTWRGILPYDEVSGMSADRVGQLAVFIDTLRQWQKILSEPRTPAQWRETGSELLSAFFMTTPDTEPVLSMVLQQWQQVLDQGVKACYDGDVPLALIRDELSLRLDDEKISQRFLSGAVNFCTLMPMRSVPFKVICLLGMNDGVYPRTIPPLGFDLMAEKSRRGDRKRRDDDRYLFLEALGSAKEYLYISYIGRSIRDNEERNPSVLVSELLEYAGLSFCLEKDRFADLDTSREALENHLIVRHTRVPFAADNYREGAEFQSFSPQWLPAALRQGEAQGPFNVPVPSEDITEITIDQLLRFYRHPVRAFFQQRLNVHFDIEDVALPEEEPFSVDNLQRYGFNTRLLDALVDGEPEERVFRILKAAGELPAGAFAQVYWEEQLQEMDVLAEKIRNARTESDIESFHYVTGPYTYSGQLTGVQENGLLRWRPAALTAADGLRLWIEHLTYSLSGRQQYSRMYGRGDTVWIFEPLTAEQAQGYLRPLLDVFVRGLNEPLPVFVKSGWAWLTTLADENTGELSDDDALQHKAGLLLLQTLQGGYQFTGEAEDDYVVRAFRHFDEALMDAIKQFSQQLFLPMFQHQKNRENEADA

Flanking regions ( +/- flanking 50bp)

AGAGCCCCGGTTAACCGCCGGCAGATGGCAATGTATGTAAGGACAGGACAATGTTTACAGTTTATCACTCCAATGATCTGGATCTGCTGAAAGATCTGATATGCCATATTATTGATAATGATAAAATTAATGATCCTTTTTGTCCTGAAACCGTGCTGGTGCAAAGCCCGGGGATGTCTCAGTGGCTGCAAATCAGTCTGGCAGAAAAACTGGGTATTGCCGCGAATATAACATTTCCGCTTCCCGCCACATTTATCTGGGATATGTTTACCCGTGTCCTGCCGGATATTCCGAAGGAGAGTGCCTTCAGCAAAGGGGCAATGACCTGGAAGCTGATGTCACTGTTGCCGCAGCGCCTTGATGATCCGGATTTTGCCCCGCTGCGCCATTATCTTGATGATGACGGGGATAAACGCAAACTGCATCAGCTATCGGGACGTATTGCTGATTTATTTGACCAGTATCTTGTCTACCGGCCGGACTGGCTGACGGCCTGGGAAAATAATGAACTGATTGACGGGCTGAGCCATAACCAGTCCTGGCAGAAATGCCTGTGGCGGGATTTGCAGACACTGACCCGCAGCCTGGGGCAGCCGGAATGGCACCGTGCCAATCTTTATCAGCGCTTTATTGATGTGCTCAATGAAGGTGACCCGGAGATTGTCGCCAATCTGCCGCCCCGCCTCTTCATCTGCGGTATCTCCGCATTACCGCCGGTGTATCTGCAGGCTCTGCGGGCGCTCGGGCAGCATACCCATATCCATCTGATGTTTACCAATCCCTGTCAGTATTACTGGGGCGATTTACAGAGCCCGGCTGCACTGCGGCGTATGCTGGCGCGCAAGCCGCAAAGCTATTGGGATAAAAAAGCCGTCAGCTGGTTTAAATCGGATGAGGATGCACCTTCACTGTTCGATTTTGAGGCTGACGGGGAACAGAATACCGGTAACCCGCTGCTGGCATCATGGGGGCGTCCCGGCCGGGATAACCTGTTTTTCCTGGAAGATATTGAAGAAATCCATGCTATTAAAGCTTTTGTCGACCGCCCGGCAGATACACTGCTGTCTGCTGTTCAGCAGGATATTCTTAATCTGGAAGACGGCAGTGTGGTGGGAAAAAACAAAGAGGAGTTTGTCACCAGTGAGCGGCGGCGGGTGATTGCGGATAATGACCGCTCCCTGACATTCCATTCCTGCCACAGTCCGCAGCGGGAAACAGAGATTTTGCAGGACTATTTACTGAACCTGCTGGAGAATGATCCGTCACTGACTCCCCGCGACATTATTGTGATGGTGGCGGATATCGACAGTTATTCTCCTTATATTCAGGCGGTTTTTGGCCAGGGAAACGAAAACCGCTATCTGCCGTTTGCTATCTCAGACCGTAAAGCCCGCCAGGCTCACCCGGTATTACAGGCAGTACTGACACTGCTGGAATTACCGCAGAGCCGTTTCACCTCAGAGCATGTACTCAGTCTGCTGGAAGTCCCGGCGGTGGCGCAGCAGTTCGGGCTGGATGAGAGCGACTTACCGCTTCTGCGCCGCTGGGTCAGCGGATCCGGTGTCCGCTGGGGGCTGGATGACCATAATATTGAATCTTTCTCACTGCCGGTTTTTGGCCAGAACACCTGGAAATTCGGGCTGGAACGCATGCTGCTGGGCTATGCAATGGCAGAGGAGGAAGGAACCTGGCGCGGGATCCTGCCGTATGACGAGGTTTCCGGTATGTCAGCGGACCGGGTCGGGCAACTGGCTGTTTTTATTGATACGTTGCGGCAGTGGCAGAAAATACTGAGTGAGCCGCGGACACCAGCACAATGGCGTGAAACCGGTTCTGAGCTTCTGTCTGCCTTTTTCATGACGACACCGGATACCGAACCGGTGCTCAGTATGGTGTTACAGCAGTGGCAGCAGGTACTGGATCAGGGGGTTAAAGCCTGTTATGACGGCGATGTTCCGCTTGCATTGATCCGGGATGAGCTCTCTCTGCGGCTGGATGACGAGAAAATCAGCCAGCGCTTTTTATCGGGAGCGGTAAACTTTTGCACGCTGATGCCGATGCGTTCTGTGCCGTTTAAGGTTATTTGCCTGCTGGGTATGAATGACGGCGTGTACCCGAGGACAATTCCGCCGCTGGGGTTTGATCTTATGGCGGAAAAAAGCCGCCGGGGTGACCGCAAACGCCGGGATGATGACCGCTATCTTTTCCTGGAGGCGCTGGGGTCAGCAAAAGAATATTTATATATCAGTTATATCGGCCGATCTATCCGCGATAATGAAGAGCGTAACCCGTCAGTGCTGGTCAGTGAACTGCTGGAATATGCCGGTCTCAGTTTTTGTCTGGAGAAAGACCGGTTTGCTGACCTGGATACCAGCCGGGAAGCGCTGGAAAATCATCTGATTGTCCGGCACACCAGGGTCCCGTTTGCAGCGGATAACTACCGGGAGGGCGCGGAATTTCAGAGCTTTTCGCCGCAGTGGTTACCGGCAGCATTACGGCAGGGCGAAGCGCAGGGGCCGTTTAATGTCCCGGTTCCGTCAGAAGATATAACAGAAATAACCATTGATCAGCTGCTGCGGTTTTACCGTCATCCGGTCAGGGCATTTTTTCAGCAGCGTCTGAATGTCCATTTTGATATTGAAGATGTGGCTCTGCCGGAAGAAGAACCGTTCAGTGTTGATAATTTACAGCGTTACGGGTTTAACACCCGGCTGCTTGATGCGCTGGTGGACGGCGAACCGGAAGAGCGGGTCTTCCGCATACTGAAGGCGGCGGGGGAACTGCCGGCCGGGGCGTTTGCACAGGTTTACTGGGAAGAACAATTACAGGAAATGGATGTTCTGGCGGAGAAAATCCGCAATGCACGGACAGAATCTGATATTGAGTCGTTTCACTATGTTACCGGGCCGTATACTTACAGCGGGCAACTGACCGGAGTTCAGGAGAACGGGCTGCTCCGCTGGCGTCCGGCGGCACTTACCGCCGCTGACGGGCTGCGTTTGTGGATTGAACATCTGACATACAGCCTGAGCGGACGACAGCAGTACAGCCGGATGTACGGGCGCGGTGATACGGTGTGGATTTTTGAGCCGCTGACGGCAGAGCAGGCGCAGGGCTATCTGCGTCCGCTGCTGGATGTGTTTGTCCGTGGTCTGAATGAGCCGCTGCCCGTCTTTGTCAAAAGCGGCTGGGCATGGCTGACCACACTGGCGGATGAGAACACCGGTGAACTCTCTGATGATGATGCACTCCAACATAAAGCCGGTTTACTGCTTCTGCAGACACTGCAGGGGGGATATCAGTTTACCGGTGAGGCGGAGGACGATTATGTCGTCCGCGCATTCCGCCATTTTGATGAAGCACTTATGGATGCAATAAAGCAATTTTCACAACAACTCTTTTTGCCGATGTTTCAACATCAGAAGAACAGGGAGAATGAGGCTGATGCCTAAACAACTAGTGCAGTTTATTTTTACGCTGCTTTTCTTTTTTACCGGTGCCA