Homologs in group_767

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03535 FBDBKF_03535 100.0 Morganella morganii S1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
EHELCC_07000 EHELCC_07000 100.0 Morganella morganii S2 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
NLDBIP_07325 NLDBIP_07325 100.0 Morganella morganii S4 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
LHKJJB_06860 LHKJJB_06860 100.0 Morganella morganii S3 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
F4V73_RS11365 F4V73_RS11365 88.4 Morganella psychrotolerans rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
PMI_RS17935 PMI_RS17935 61.3 Proteus mirabilis HI4320 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase

Distribution of the homologs in the orthogroup group_767

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_767

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADX9 5.48e-86 255 63 0 192 1 rsmD Ribosomal RNA small subunit methyltransferase D Escherichia coli (strain K12)
P0ADY0 5.48e-86 255 63 0 192 3 rsmD Ribosomal RNA small subunit methyltransferase D Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44869 5.6e-76 229 59 4 192 1 rsmD Ribosomal RNA small subunit methyltransferase D Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57136 1.24e-48 160 38 2 184 3 rsmD Ribosomal RNA small subunit methyltransferase D Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89B29 3.88e-45 151 40 2 179 3 rsmD Ribosomal RNA small subunit methyltransferase D Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O34331 3e-26 102 31 1 183 3 ylbH Putative rRNA methyltransferase YlbH Bacillus subtilis (strain 168)
I6XFS7 2.59e-19 84 36 5 183 1 Rv2966c RNA/DNA methyltransferase Rv2966c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q9ZD05 2.9e-15 74 25 5 223 4 RP545 Uncharacterized methylase RP545 Rickettsia prowazekii (strain Madrid E)
Q6KHE2 7.39e-07 52 26 4 119 3 MMOB5020 Uncharacterized RNA methyltransferase MMOB5020 Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711)
Q74I68 3.56e-06 50 31 4 104 3 LJ_1698 Uncharacterized RNA methyltransferase LJ_1698 Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_04070
Feature type CDS
Gene rsmD
Product 16S rRNA (guanine(966)-N(2))-methyltransferase
Location 134929 - 135537 (strand: 1)
Length 609 (nucleotides) / 202 (amino acids)

Contig

Accession ZDB_681
Length 269562 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_767
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03602 Conserved hypothetical protein 95

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0742 Translation, ribosomal structure and biogenesis (J) J 16S rRNA G966 N2-methylase RsmD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] - -

Protein Sequence

MVKKAQTAPQGQIRIIAGLWRGRKLPVLTHDGLRPTTDRVRETLFNWLMPVINGARCLDAFAGSGALGFEALSRYASAVTFTELNRAVAAQISANARLLKCEQATVVNQSALQFLAQPGTPFDVVFLDPPFRKGLLQETVDLLEQNNWLSPEAMIYIEAEAESDTLVVPGNWVCHREKVAGQVVYRLYLRQTQTTEQESVCS

Flanking regions ( +/- flanking 50bp)

TATTCATATTTCTGAATTAATAATTTCAGAATTAATAAGTTACGAAGGTTATGGTTAAAAAAGCTCAAACCGCACCACAAGGGCAGATCCGCATTATCGCCGGTCTCTGGCGCGGACGTAAACTGCCGGTTCTGACACATGACGGCCTGCGCCCGACCACTGATCGCGTGCGCGAAACCCTGTTTAACTGGCTGATGCCGGTGATTAACGGCGCACGCTGTCTTGATGCGTTTGCAGGCAGCGGCGCACTCGGTTTTGAGGCGCTTTCCCGCTATGCCTCCGCCGTGACATTTACGGAACTCAACCGCGCTGTTGCGGCTCAGATCAGCGCCAATGCGCGTCTGCTCAAATGTGAACAGGCGACTGTCGTTAATCAGAGCGCCCTGCAGTTTCTGGCACAGCCGGGAACACCGTTTGATGTGGTGTTTCTCGACCCGCCGTTCCGTAAAGGGCTGCTTCAGGAAACCGTTGATTTACTGGAGCAGAATAACTGGCTCAGCCCGGAAGCAATGATCTACATTGAAGCCGAGGCGGAATCGGACACACTGGTTGTTCCGGGTAACTGGGTGTGCCACCGGGAGAAGGTGGCCGGCCAGGTTGTGTATCGTCTTTATCTGCGTCAGACGCAGACGACTGAACAGGAGTCCGTATGTTCCTGATTAATATTGGCCGCATACTGATGCTGGCCGTCTGGGGTTTTCTGATTTTC