COG0742


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0742, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 16S rRNA G966 N2-methylase RsmD
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0742 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_767 FBDBKF_03535 112264 112872 1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Morganella morganii S1
1 group_767 EHELCC_07000 134231 134839 -1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Morganella morganii S2
2 group_767 NLDBIP_07325 134104 134712 -1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Morganella morganii S4
3 group_767 LHKJJB_06860 97850 98458 -1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Morganella morganii S3
4 group_767 HKOGLL_04070 134929 135537 1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Morganella morganii S5
5 group_767 F4V73_RS11365 414404 415000 -1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Morganella psychrotolerans
6 group_767 PMI_RS17935 3941482 3942066 -1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase Proteus mirabilis HI4320