Homologs in group_428

Help

6 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00255 FBDBKF_00255 100.0 Morganella morganii S1 - Helix-turn-helix transcriptional regulator
EHELCC_01290 EHELCC_01290 100.0 Morganella morganii S2 - Helix-turn-helix transcriptional regulator
NLDBIP_02170 NLDBIP_02170 100.0 Morganella morganii S4 - Helix-turn-helix transcriptional regulator
LHKJJB_03685 LHKJJB_03685 100.0 Morganella morganii S3 - Helix-turn-helix transcriptional regulator
PMI_RS07475 PMI_RS07475 60.2 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS08455 PMI_RS08455 42.7 Proteus mirabilis HI4320 - S24 family peptidase

Distribution of the homologs in the orthogroup group_428

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_428

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47587 1.87e-87 261 53 3 242 4 rdgA HTH-type transcriptional regulator RdgA Pectobacterium carotovorum subsp. carotovorum
P14819 1.1e-86 259 54 2 233 1 CI Repressor protein CI Enterobacteria phage phi80
Q06553 8.97e-51 168 38 4 242 2 prtR HTH-type transcriptional regulator PrtR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P16117 1.73e-27 103 71 0 69 1 CI Repressor protein CI (Fragment) Enterobacteria phage 434
Q37906 2.66e-22 94 31 7 233 4 CI Repressor protein CI Pseudomonas phage D3
P03036 1.57e-16 74 54 0 64 1 CRO Regulatory protein cro Enterobacteria phage 434
Q79S39 4.96e-10 60 44 0 65 4 s087 HTH-type transcriptional regulator for conjugative element SXT Vibrio cholerae
Q8GJK1 4.96e-10 60 44 0 65 4 None HTH-type transcriptional regulator for conjugative element pMERPH Shewanella putrefaciens
Q79RI9 4.96e-10 60 44 0 65 4 ORF-96 HTH-type transcriptional regulator for conjugative element R391 Providencia rettgeri
P44207 7.42e-05 46 26 9 196 1 HI_1476 Uncharacterized HTH-type transcriptional regulator HI_1476 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O27383 0.000672 40 47 1 46 4 MTH_1328 Uncharacterized HTH-type transcriptional regulator MTH_1328 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_03360
Feature type CDS
Gene -
Product Helix-turn-helix transcriptional regulator
Location 271061 - 271747 (strand: -1)
Length 687 (nucleotides) / 228 (amino acids)

Contig

Accession ZDB_680
Length 282413 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_428
Orthogroup size 7
N. genomes 6

Actions

Genomic region

Domains

PF00717 Peptidase S24-like
PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2932 Mobilome: prophages, transposons (X) X Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains

Protein Sequence

MSISERVKNKRTTLGLTQAELAERAGTTQQSIEQLESGKTKRPRFLPELAAALNCSVDWLVTGNQEDSIPPQSEWGAVTTWDSGTPLEDDEVEVPFLKDIELACGNGSFINVDYNGYKLRFSKSTLRKIGAPSDGSTIVCFPAKGDSMEPVIPDKAAVAIDISNKKIIDGKVYAIDQDGLKRLKMLYRRPGNKLIIRSYNRDEYEDEEADENEVQIVGRMFWYSVLDY

Flanking regions ( +/- flanking 50bp)

CAATTACAGGTTTTCTTGTGACTATCGATAAGATATTTAAAGAGGTTTTTATGTCGATCTCAGAACGAGTCAAAAACAAGAGAACTACTCTCGGATTAACACAGGCTGAGTTAGCCGAACGAGCAGGAACTACACAGCAGTCAATAGAACAATTAGAAAGCGGTAAAACCAAGAGGCCACGGTTTTTGCCGGAGTTAGCTGCGGCATTAAATTGCTCAGTTGATTGGTTAGTTACAGGAAATCAGGAGGATTCTATTCCTCCACAATCTGAGTGGGGAGCTGTTACGACGTGGGACAGCGGAACGCCACTTGAAGATGACGAGGTTGAAGTGCCATTTTTAAAAGACATTGAGTTGGCATGTGGCAATGGCAGTTTTATTAATGTTGATTATAACGGCTACAAATTAAGGTTTTCAAAATCCACCCTTAGAAAAATTGGTGCGCCGTCTGATGGGTCAACTATTGTCTGTTTCCCAGCTAAAGGCGATAGCATGGAGCCAGTTATACCTGATAAGGCAGCTGTAGCTATTGATATATCTAATAAAAAAATAATTGACGGGAAAGTTTACGCGATAGATCAGGATGGATTGAAGCGTTTGAAGATGCTTTATCGCAGACCAGGGAACAAACTTATTATTCGTAGTTATAACCGTGATGAATACGAAGATGAAGAAGCCGATGAAAATGAAGTCCAGATAGTTGGCAGAATGTTTTGGTATTCCGTACTTGATTATTGAGGTAAGTAATGGATAACTTTAAGGCAAGACTGAAAAATCATGTTGAGCAT