Homologs in group_222

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00405 FBDBKF_00405 100.0 Morganella morganii S1 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
EHELCC_01140 EHELCC_01140 100.0 Morganella morganii S2 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
NLDBIP_02320 NLDBIP_02320 100.0 Morganella morganii S4 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
LHKJJB_03835 LHKJJB_03835 100.0 Morganella morganii S3 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
F4V73_RS06385 F4V73_RS06385 96.5 Morganella psychrotolerans nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
F4V73_RS17905 F4V73_RS17905 61.3 Morganella psychrotolerans nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
PMI_RS08515 PMI_RS08515 91.8 Proteus mirabilis HI4320 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_222

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_222

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69924 0.0 704 88 0 376 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 0.0 704 88 0 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P37427 0.0 701 88 0 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43755 0.0 672 84 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57275 0.0 603 73 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AS5 0.0 601 72 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9W4 0.0 555 71 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P11156 1.97e-137 400 52 3 383 3 NRDB Ribonucleoside-diphosphate reductase subunit beta Enterobacteria phage T4
Q9ZKC3 3.26e-28 116 24 4 348 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
P55983 1.34e-27 114 24 4 348 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
O83092 2.74e-20 94 23 11 352 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q9KFH7 1.06e-19 92 25 11 322 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q9Z6S4 1.32e-15 80 24 9 291 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
P0DKH3 1.89e-15 80 24 11 364 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
Q9PL92 2.23e-15 80 22 9 292 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
O84835 2.88e-15 79 23 10 292 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P49730 4.43e-15 79 23 10 359 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
P36603 1.15e-13 75 24 10 342 3 suc22 Ribonucleoside-diphosphate reductase small chain Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P42521 1.96e-13 73 25 9 311 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
Q197B2 3.3e-13 73 25 9 292 3 IIV3-048L Probable ribonucleoside-diphosphate reductase small subunit 048L Invertebrate iridescent virus 3
P9WH71 1.75e-12 71 25 8 278 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 1.75e-12 71 25 8 278 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CBQ2 1.83e-12 71 25 9 278 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P09938 2.08e-12 71 23 13 389 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P50651 3.41e-12 70 24 10 326 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
P50649 6.66e-12 69 23 8 308 3 RNR2 Ribonucleoside-diphosphate reductase small subunit Plasmodium falciparum (isolate FCR-3 / Gambia)
Q9LSD0 1.32e-11 68 24 10 341 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
O67475 1.78e-11 69 27 9 244 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
O67475 6.39e-06 52 27 5 115 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
P50650 4.64e-11 67 23 8 308 2 RNR2 Ribonucleoside-diphosphate reductase small chain Plasmodium falciparum (isolate Dd2)
Q4R741 5.68e-11 66 23 7 308 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
Q9C167 6.32e-11 67 23 8 315 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q7LG56 8.57e-11 66 23 7 308 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
P48592 9.05e-11 66 24 9 324 1 RnrS Ribonucleoside-diphosphate reductase subunit M2 Drosophila melanogaster
Q5R9G0 9.3e-11 66 23 7 308 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
P9WH73 1.53e-10 65 25 8 289 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 1.53e-10 65 25 8 289 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q6PEE3 2.21e-10 65 23 7 308 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P50621 1.62e-09 62 23 9 290 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
P79733 1.77e-09 62 23 8 326 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
Q9QTF2 3.12e-09 61 23 8 305 3 RR-2 Ribonucleoside-diphosphate reductase small chain Red sea bream iridovirus
P17424 4.13e-09 60 24 6 267 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37146 5.28e-09 60 23 6 267 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
P11157 5.38e-09 60 23 7 324 1 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Mus musculus
P11158 1.04e-08 59 24 8 327 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
P20493 1.28e-08 59 24 8 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
P0C8I0 2.27e-08 58 21 7 327 3 Ken-056 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Pig/Kenya/KEN-50/1950)
Q6GZQ8 3.18e-08 58 22 11 319 3 FV3-067L Putative ribonucleoside-diphosphate reductase small subunit 067L Frog virus 3 (isolate Goorha)
Q9DHU2 4.02e-08 57 23 8 289 3 20L Ribonucleoside-diphosphate reductase small chain Yaba-like disease virus
Q60561 4.58e-08 58 23 7 324 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
O57175 4.68e-08 57 23 8 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
P31350 5.1e-08 57 22 7 320 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
Q4R7Q7 6.44e-08 57 23 7 320 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
Q9XC20 6.99e-08 57 24 8 254 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
Q4KLN6 8.44e-08 57 23 7 325 2 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Rattus norvegicus
O15910 8.84e-08 57 22 8 297 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
P29883 1.68e-07 55 23 8 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
P07201 1.86e-07 56 22 8 310 2 None Ribonucleoside-diphosphate reductase small chain Spisula solidissima
P42170 2.48e-07 55 23 7 298 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Caenorhabditis elegans
A0A7H0DN21 2.84e-07 55 22 7 324 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
Q91FE8 3.1e-07 55 20 11 332 3 IIV6-376L Probable ribonucleoside-diphosphate reductase small subunit 376L Invertebrate iridescent virus 6
P0DSS7 3.31e-07 55 23 7 320 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
P0DSS8 5.54e-07 54 22 7 324 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
O46310 7.76e-07 53 21 8 311 3 None Ribonucleoside-diphosphate reductase small subunit Leishmania amazonensis
O30601 1.15e-05 50 21 8 290 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 1.15e-05 50 21 8 290 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
P75461 4.02e-05 48 21 8 283 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_03210
Feature type CDS
Gene nrdB
Product class Ia ribonucleoside-diphosphate reductase subunit beta
Location 247457 - 248587 (strand: -1)
Length 1131 (nucleotides) / 376 (amino acids)

Contig

Accession ZDB_680
Length 282413 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_222
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MSYTTFSQVHNDQLKEPMFFGQPVNVARYDQQKYPIFESLIEKQLSFFWRPEEVDVSRDRIDYNALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVANEEIIKRAEDISGYYDDLIRMTNEYHMFGEGTHTANGKTFTVTLRALKRQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKECEQDCYDLFVRAAEQEKEWADYLFCNGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFKVRSNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEVNTDELSNFEL

Flanking regions ( +/- flanking 50bp)

ACGATGATGGTTGTGAAGGCGGCGCGTGTAAAATTTAAGGTGAATAAATAATGTCTTATACAACATTTTCGCAGGTACATAATGATCAGCTGAAAGAACCGATGTTCTTCGGGCAGCCGGTAAACGTTGCCCGTTATGATCAGCAAAAGTACCCGATTTTTGAATCACTGATTGAAAAACAGCTCTCCTTCTTCTGGCGTCCGGAAGAAGTGGACGTATCCCGCGATCGCATTGACTACAATGCCCTGCCGGATCACGAAAAGCATATATTCATCAGCAACCTGAAATACCAGACCCTGCTGGATTCCATCCAGGGCCGCAGCCCGAACGTGGCGCTGCTGCCGCTGATCTCCATTCCGGAGCTGGAAACCTGGGTGGAAACCTGGTCTTTCTCGGAAACCATTCACTCCCGTTCTTACACGCATATTATCCGTAATATCGTGAATGATCCGTCAGTGGTATTCGATGATATCGTGGCAAACGAAGAGATCATCAAACGCGCGGAAGATATTTCCGGCTATTATGATGATCTTATCCGTATGACCAATGAATATCATATGTTCGGTGAAGGGACGCATACCGCGAACGGTAAAACCTTTACCGTTACCCTGCGCGCCCTGAAACGCCAGCTGTATCTGTGCCTGATGAGCGTCAACGCACTGGAAGCGATCCGTTTCTATGTCAGTTTCGCCTGCTCTTTCGCCTTTGCCGAGCGCGAACTGATGGAAGGTAATGCGAAAATCATCAAACTGATCGCCCGTGATGAAGCGCTGCACCTGACCGGCACCCAGCATATGCTCAACCTGCTGCGCAGCGGCCAGGATGATCCGGAAATGGCGGAAATCGCCAAAGAGTGCGAGCAGGATTGCTACGACCTGTTTGTCCGTGCGGCGGAGCAGGAAAAAGAGTGGGCAGATTACCTGTTCTGCAACGGCTCGATGATCGGTCTGAACAAAGATATCCTGTGTCAGTATGTGGAATATATCACCAATATCCGCATGCAGGCGGTGGGTCTGCCGCTGCCGTTCAAAGTCCGCTCGAACCCGATTCCGTGGATCAACGCCTGGCTGGTATCCGATAACGTCCAGGTGGCGCCACAGGAAGTGGAAGTCAGTTCCTATCTGGTCGGTCAGATTGACTCTGAAGTCAACACTGACGAACTGAGTAACTTCGAACTCTGATGCCCCGCTATAAAATCACCCTGCATGGCAACATGCAGGGTATTCAGCTG