Homologs in group_2269

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_17340 EHELCC_17340 100.0 Morganella morganii S2 sbcC exonuclease subunit SbcC
NLDBIP_17855 NLDBIP_17855 100.0 Morganella morganii S4 sbcC exonuclease subunit SbcC
LHKJJB_17775 LHKJJB_17775 100.0 Morganella morganii S3 sbcC exonuclease subunit SbcC
HKOGLL_17785 HKOGLL_17785 100.0 Morganella morganii S5 sbcC exonuclease subunit SbcC
F4V73_RS16620 F4V73_RS16620 65.3 Morganella psychrotolerans - SbcC/MukB-like Walker B domain-containing protein
PMI_RS00240 PMI_RS00240 45.4 Proteus mirabilis HI4320 - AAA family ATPase

Distribution of the homologs in the orthogroup group_2269

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2269

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13458 5.79e-104 357 57 3 324 1 sbcC Nuclease SbcCD subunit C Escherichia coli (strain K12)
P13458 2.04e-74 272 56 2 298 1 sbcC Nuclease SbcCD subunit C Escherichia coli (strain K12)
Q9HWB8 1.84e-44 179 50 2 190 3 sbcC Nuclease SbcCD subunit C Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O68032 2.76e-34 147 52 2 162 3 sbcC Nuclease SbcCD subunit C Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9KM67 3.7e-27 123 33 9 301 3 sbcC Nuclease SbcCD subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KM67 1.54e-17 92 31 4 197 3 sbcC Nuclease SbcCD subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q4L655 2.61e-25 117 47 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus haemolyticus (strain JCSC1435)
Q4L655 9.94e-10 67 26 11 272 3 sbcC Nuclease SbcCD subunit C Staphylococcus haemolyticus (strain JCSC1435)
Q8CPC5 1.99e-23 111 37 6 186 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q8CPC5 8.5e-09 63 22 13 405 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPJ3 2.09e-23 111 37 6 186 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5HPJ3 6.48e-09 64 22 13 405 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q6G9L2 2.82e-23 110 42 5 160 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MSSA476)
Q6G9L2 1.85e-08 62 27 7 201 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MSSA476)
Q6GH60 4.63e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MRSA252)
Q6GH60 8.64e-09 63 26 9 245 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MRSA252)
Q7A5S6 4.87e-23 110 46 4 143 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain N315)
Q7A5S6 5.11e-09 64 26 9 245 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain N315)
Q99UD0 4.87e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q99UD0 5.11e-09 64 26 9 245 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu50 / ATCC 700699)
A5ISM9 4.87e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH9)
A5ISM9 5.11e-09 64 26 9 245 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH9)
A6U1G7 4.87e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH1)
A6U1G7 5.11e-09 64 26 9 245 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH1)
A7X203 4.87e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu3 / ATCC 700698)
A7X203 5.11e-09 64 26 9 245 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q8NWV1 5.58e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MW2)
Q8NWV1 1.66e-08 63 27 7 201 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MW2)
A8Z219 5.68e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300 / TCH1516)
A8Z219 1.61e-08 63 27 7 201 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300 / TCH1516)
A6QGP8 5.68e-23 110 46 4 143 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Newman)
A6QGP8 1.61e-08 63 27 7 201 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Newman)
Q5HG72 5.68e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain COL)
Q5HG72 1.61e-08 63 27 7 201 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain COL)
Q2FH88 5.78e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300)
Q2FH88 1.7e-08 62 27 7 201 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300)
Q2YXX0 6.08e-23 110 46 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2YXX0 1.63e-08 63 26 9 245 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q9RT44 6.96e-23 109 43 2 123 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9RT44 1.59e-18 95 34 9 210 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q97FK1 1.25e-22 108 36 6 185 3 sbcC Nuclease SbcCD subunit C Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q97FK1 1.14e-21 105 39 4 157 3 sbcC Nuclease SbcCD subunit C Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q2FYT3 3.81e-22 107 45 4 143 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FYT3 1.73e-08 62 27 7 201 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q49XE1 3.15e-21 104 46 4 129 3 sbcC Nuclease SbcCD subunit C Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q49XE1 1.23e-10 70 22 16 473 3 sbcC Nuclease SbcCD subunit C Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
O67124 4e-20 100 34 4 179 3 rad50 Probable DNA double-strand break repair Rad50 ATPase Aquifex aeolicus (strain VF5)
O67124 4.39e-17 90 35 2 144 3 rad50 Probable DNA double-strand break repair Rad50 ATPase Aquifex aeolicus (strain VF5)
O06714 4.21e-20 100 27 8 301 3 sbcC Nuclease SbcCD subunit C Bacillus subtilis (strain 168)
O06714 7.73e-11 70 35 3 152 3 sbcC Nuclease SbcCD subunit C Bacillus subtilis (strain 168)
O83635 4.32e-20 100 40 5 138 3 sbcC Nuclease SbcCD subunit C Treponema pallidum (strain Nichols)
O83635 5.4e-11 71 25 17 465 3 sbcC Nuclease SbcCD subunit C Treponema pallidum (strain Nichols)
Q9CFZ0 1.05e-19 99 34 13 240 3 sbcC Nuclease SbcCD subunit C Lactococcus lactis subsp. lactis (strain IL1403)
Q9CFZ0 3.22e-05 52 28 7 188 3 sbcC Nuclease SbcCD subunit C Lactococcus lactis subsp. lactis (strain IL1403)
Q58718 1.33e-08 63 23 3 175 1 rad50 DNA double-strand break repair Rad50 ATPase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9X1X1 3.77e-07 58 30 4 127 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9X1X1 6.28e-06 54 27 3 134 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P62134 5.35e-07 58 24 4 175 3 rad50 DNA double-strand break repair Rad50 ATPase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q8TXI4 4.63e-06 55 28 6 175 3 rad50 DNA double-strand break repair Rad50 ATPase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q8ILR9 0.000466 48 26 4 196 1 PF14_0175 Protein PF3D7_1417600 Plasmodium falciparum (isolate 3D7)
P11109 0.000483 48 25 9 253 2 D13 Probable exonuclease subunit 2 Escherichia phage T5

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17445
Feature type CDS
Gene sbcC
Product exonuclease subunit SbcC
Location 20887 - 24573 (strand: 1)
Length 3687 (nucleotides) / 1228 (amino acids)

Contig

Accession contig_28
Length 42791 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2269
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13476 AAA domain
PF13558 SbcC/RAD50-like, Walker B motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0419 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD ATPase subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03546 DNA repair protein SbcC/Rad50 - -

Protein Sequence

MKILTLRFKNINSLQGEWKIDFTAEPFAGNGLFAITGPTGAGKTTLLDAICLALYHETPRVKTSASQNDVMTRHTAECLAEVEFSVKGKAYRAFWSQRRARDKADGNLQPPKAELAECATGKILSDKLTQVRESIIEITGLDFARFTRSVLLSQGNFAAFLNADDNERADLLEELTGTEIYRLISRQVYEDYKAAQQALSLLEAQTGAIRLMTDDERLTCQAELTTLQTDEQAQLIRQTQLQAALQWWQHRDTLNTETEQRQQQHAAVMQQIQDARPQLDRLARAKPAEKLRPAREAVQNSAVLSAQLTTRMQELAQTTESTTRSLQPLSSQCEEQQQLLTGLKQQHQQLETLAENEIRPLDNRLQLLNSQSDALKQQYQAQLQEQQALQNQSAQLQQQLAQTRDSYALSTQFRQENAQKAELPSAIVQWRHELHTRQEYRTQISALTEQQQAGEIQQQSLTAAHTEMTNKLAVRNQSVLPLKTELTALQTTLQQARQTEPDQQLTTQLQQTGEKRGLLQKLASLAPEIALLTRNRENLLQQQHASQEEIKTLTEWIAQQEPVLADQQTHLHDLTARYRLEQTIVRLEAERQRLQAGEPCPLCGSTDHPAVADYQQVTPDETAQRLEVLTHTIREAEKTLTAKQSQLAFTRTQHEKLSSTLQETGETLAAHTAQWQKICLEGEFDSLTDSPASLNDITQHYDGLYQQQQQAQEARHALETQVLTLQNRLQAEEAECERLSQALQRNTQEQQFLSQQQTERAARLTQLYPQQQTLETSLTQTVTAFGYTIPSPAKTTEWLAQRQQESDQFAANEQLMQQSAQQLAELTAQQQNLEAQQAKLTTQLAEQSTALAALQQQNNAVTEQRQALFGDKNISTELQKLLHQQQETESRLKTLTQQRDSLQQNLAGLRGEEKRLQQQILDAQEQHHHNQQVFQQQLAESPFADEADFLAALLSEEEHQQLQALETALNQAQLKAATSLGDARAALAQHLSAQPEPFREQSRHQLAELHTAAAQQLRELSSRQGELRGQLTADDNLRVQQRDLLDKITRHQQDATDRSRLNQLIGSADGAKFSRFAQGLTLDYLIHLANRRLEKLHGRYVLQRKTADSLELQITDTWQADTQRDTKTLSGGETFLVSLALALALSDLVSHKTQIESLFLDEGFGTLDQETLDIALDALDNLNATGKTIGVISHIEAMKERIAVQISVRKMNGLGISKLSPEYRVTTA

Flanking regions ( +/- flanking 50bp)

ATCAGCGGAAAAAACAATACCCGCACAGACAGCCGGAAAGGAAAAAGTGAATGAAGATCCTGACATTACGGTTTAAAAATATCAATTCACTGCAGGGCGAATGGAAGATTGATTTTACGGCAGAACCCTTTGCCGGAAACGGGTTGTTTGCCATCACCGGCCCGACCGGCGCCGGGAAAACGACTTTACTCGATGCTATCTGTCTCGCGCTCTACCATGAAACCCCGCGCGTAAAAACATCCGCATCCCAGAATGATGTGATGACCCGCCATACTGCGGAATGTCTGGCCGAAGTGGAATTTTCCGTCAAAGGAAAAGCATACCGCGCGTTCTGGAGCCAGCGGCGCGCCAGAGATAAAGCCGACGGTAATCTTCAGCCGCCGAAGGCCGAACTGGCTGAGTGCGCCACCGGAAAAATCCTCTCTGACAAACTGACGCAGGTCAGGGAGAGCATTATTGAGATCACCGGGCTGGATTTTGCCCGTTTTACCCGTTCCGTTCTGTTATCACAGGGAAATTTCGCTGCCTTTCTGAATGCCGATGATAATGAACGGGCTGATTTGCTGGAAGAACTGACCGGTACGGAAATTTACCGTCTGATTTCCCGTCAGGTTTATGAAGACTACAAAGCCGCGCAACAGGCGTTGTCTCTGCTGGAAGCGCAGACTGGTGCTATCCGGCTGATGACAGATGATGAACGGCTTACGTGTCAGGCTGAACTGACCACACTGCAGACGGATGAGCAGGCTCAGCTTATCCGCCAGACACAGTTACAGGCCGCACTGCAATGGTGGCAGCACCGCGACACACTGAATACAGAAACAGAACAGCGGCAACAGCAGCATGCCGCTGTTATGCAGCAGATACAGGATGCCCGGCCGCAGCTTGACCGGCTTGCCCGCGCCAAACCGGCGGAAAAACTGCGTCCGGCCAGGGAGGCGGTGCAGAACAGTGCCGTCTTAAGTGCACAGCTGACCACCCGTATGCAGGAACTGGCACAAACAACAGAGAGCACCACCCGCTCGCTGCAGCCACTGAGCAGTCAGTGTGAGGAACAACAACAGTTACTCACCGGGCTGAAACAGCAACATCAGCAACTGGAAACACTGGCAGAGAACGAAATCAGGCCGCTGGATAACCGGCTGCAGTTGCTGAACAGTCAGTCTGATGCACTGAAACAGCAATATCAGGCACAGTTGCAGGAACAGCAGGCACTGCAAAACCAGTCAGCACAACTTCAGCAACAGCTGGCGCAAACCCGTGACAGTTATGCGCTCAGCACACAGTTCAGACAGGAAAATGCGCAGAAAGCAGAGCTTCCGTCTGCCATTGTTCAGTGGCGGCATGAGCTGCACACCCGGCAGGAATACCGGACTCAGATTTCCGCACTGACAGAACAGCAGCAGGCGGGTGAGATTCAGCAACAGTCACTGACCGCAGCACACACAGAAATGACAAATAAACTGGCTGTCCGCAATCAGTCTGTTCTGCCGCTGAAAACAGAGCTGACGGCCTTACAAACCACATTGCAGCAGGCCCGGCAGACCGAACCGGACCAGCAGTTAACCACGCAACTGCAACAGACCGGTGAAAAACGCGGATTACTGCAAAAACTGGCATCACTGGCACCGGAAATCGCCCTGCTGACCCGTAACCGGGAAAACCTTCTGCAACAACAGCATGCCTCTCAGGAAGAGATTAAAACGCTGACAGAATGGATTGCACAACAGGAACCGGTTCTGGCCGACCAGCAGACACATCTGCATGACCTGACAGCCCGTTACCGGCTGGAGCAAACCATTGTCCGGCTGGAGGCAGAACGTCAGCGTTTACAGGCCGGAGAACCCTGTCCGTTGTGCGGCAGTACCGATCACCCGGCTGTCGCTGACTATCAGCAGGTAACACCGGATGAAACCGCACAGCGCCTGGAGGTACTGACACACACTATCAGAGAGGCGGAGAAAACACTGACGGCGAAACAATCTCAGCTGGCTTTCACCCGCACACAACACGAAAAACTGAGCAGTACGCTGCAGGAAACCGGAGAAACCCTCGCGGCCCATACCGCACAGTGGCAGAAAATCTGTCTTGAGGGCGAATTTGACTCCCTGACAGATTCCCCGGCATCGCTGAATGACATCACTCAGCATTATGACGGGCTGTATCAGCAGCAACAGCAGGCTCAGGAAGCCCGCCATGCCCTGGAAACTCAGGTATTAACACTGCAAAACCGGTTACAGGCGGAAGAGGCTGAATGTGAACGGCTGTCACAGGCATTACAGCGCAATACTCAGGAACAGCAGTTTCTGTCACAGCAGCAGACGGAACGGGCCGCCCGTCTGACGCAGCTTTATCCGCAGCAACAGACACTGGAAACCTCGCTGACACAAACAGTAACCGCCTTTGGTTATACCATTCCCTCACCGGCAAAAACCACTGAGTGGCTGGCGCAGCGTCAGCAGGAAAGTGATCAGTTCGCCGCAAATGAACAACTGATGCAACAAAGTGCACAGCAACTTGCGGAACTGACCGCACAGCAGCAAAATCTGGAAGCACAGCAGGCAAAACTGACCACACAACTGGCAGAACAGTCCACCGCACTGGCTGCACTGCAACAACAGAACAACGCCGTCACGGAACAACGACAGGCACTGTTCGGTGATAAAAATATCAGCACGGAATTACAGAAACTGCTTCATCAGCAGCAGGAAACGGAAAGCCGCCTGAAAACACTGACACAGCAGCGCGACAGCCTGCAACAAAACCTCGCCGGACTCCGGGGTGAAGAAAAGCGGCTGCAACAGCAGATTCTGGATGCACAGGAGCAGCACCACCACAATCAGCAGGTTTTTCAGCAGCAACTGGCAGAAAGCCCGTTTGCCGATGAGGCTGATTTCCTCGCCGCCCTGCTCAGTGAAGAGGAACACCAACAGTTACAGGCGCTGGAAACAGCGCTTAACCAGGCACAGCTGAAAGCCGCCACCAGCCTCGGGGATGCCAGAGCCGCGCTGGCGCAGCATCTGTCAGCACAACCGGAGCCGTTCCGCGAACAGTCCCGGCACCAGCTTGCAGAATTGCATACCGCCGCCGCACAGCAACTGCGGGAACTGAGCAGCCGTCAGGGGGAATTGCGCGGGCAGCTGACGGCGGATGACAATCTGCGGGTACAGCAGCGCGATTTACTGGATAAAATCACCCGGCATCAGCAGGACGCCACCGACCGCAGCCGCCTCAACCAGCTGATAGGCTCTGCCGATGGTGCCAAATTCAGCCGCTTTGCGCAGGGACTGACGCTGGATTACCTGATCCATCTGGCGAACCGCCGGCTGGAGAAACTGCATGGCCGCTATGTGTTGCAGCGCAAAACGGCAGACAGCCTGGAGCTGCAAATTACCGATACCTGGCAGGCAGACACTCAGCGTGATACCAAAACCCTCTCCGGCGGGGAAACGTTCCTGGTCAGTCTGGCGCTCGCACTGGCCTTGTCTGATCTCGTCAGCCATAAGACACAGATTGAATCTCTGTTCCTCGATGAAGGCTTCGGCACGCTGGATCAGGAAACTCTCGATATTGCGCTGGATGCACTCGATAACCTGAATGCCACCGGAAAAACCATCGGCGTTATCAGCCATATTGAAGCCATGAAAGAACGTATTGCAGTGCAGATCTCTGTCAGAAAAATGAACGGACTCGGGATCAGTAAATTATCGCCGGAATATCGTGTTACAACGGCGTGATATTTTCACGCTGTCAGCACACAATGATTAATTCAATGATATTTATTGGA