Orthogroup:group_2269


Homologs in group_2269

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17445 FBDBKF_17445 Morganella morganii S1 sbcC exonuclease subunit SbcC
EHELCC_17340 EHELCC_17340 Morganella morganii S2 sbcC exonuclease subunit SbcC
NLDBIP_17855 NLDBIP_17855 Morganella morganii S4 sbcC exonuclease subunit SbcC
LHKJJB_17775 LHKJJB_17775 Morganella morganii S3 sbcC exonuclease subunit SbcC
HKOGLL_17785 HKOGLL_17785 Morganella morganii S5 sbcC exonuclease subunit SbcC
F4V73_RS16620 F4V73_RS16620 Morganella psychrotolerans - SbcC/MukB-like Walker B domain-containing protein
PMI_RS00240 PMI_RS00240 Proteus mirabilis HI4320 - AAA family ATPase

Distribution of group_2269 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2269 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2269

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2269.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sbcC 5
2 - 2

Product

# Product Occurence
1 exonuclease subunit SbcC 5
2 SbcC/MukB-like Walker B domain-containing protein 1
3 AAA family ATPase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0419 7 L Replication, recombination and repair (L) DNA repair exonuclease SbcCD ATPase subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03546 7 DNA repair protein SbcC/Rad50 - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13476 7 AAA domain
PF13558 7 SbcC/RAD50-like, Walker B motif

Annotations of the 43 SwissProt hits

Annotation Number of occurrences
DNA double-strand break repair Rad50 ATPase 8
Nuclease SbcCD subunit C 27
Probable DNA double-strand break repair Rad50 ATPase 1
Probable exonuclease subunit 2 1
Protein PF3D7_1417600 1
Structural maintenance of chromosomes protein 1A 4
Structural maintenance of chromosomes protein 2 1

Protein length

Min length 1228
Max length 1241
Mean length (sd) 1229.9 (4.9)
Median length 1228.0

Protein length distribution