Homologs in group_2269

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17445 FBDBKF_17445 45.4 Morganella morganii S1 sbcC exonuclease subunit SbcC
EHELCC_17340 EHELCC_17340 45.4 Morganella morganii S2 sbcC exonuclease subunit SbcC
NLDBIP_17855 NLDBIP_17855 45.4 Morganella morganii S4 sbcC exonuclease subunit SbcC
LHKJJB_17775 LHKJJB_17775 45.4 Morganella morganii S3 sbcC exonuclease subunit SbcC
HKOGLL_17785 HKOGLL_17785 45.4 Morganella morganii S5 sbcC exonuclease subunit SbcC
F4V73_RS16620 F4V73_RS16620 45.9 Morganella psychrotolerans - SbcC/MukB-like Walker B domain-containing protein

Distribution of the homologs in the orthogroup group_2269

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2269

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13458 1.93e-87 310 54 1 301 1 sbcC Nuclease SbcCD subunit C Escherichia coli (strain K12)
P13458 2.38e-75 275 57 5 302 1 sbcC Nuclease SbcCD subunit C Escherichia coli (strain K12)
Q9HWB8 9.37e-52 203 44 5 270 3 sbcC Nuclease SbcCD subunit C Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O68032 3.29e-38 159 41 4 212 3 sbcC Nuclease SbcCD subunit C Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
O68032 5.04e-36 152 46 2 193 3 sbcC Nuclease SbcCD subunit C Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9KM67 2.64e-30 134 34 13 326 3 sbcC Nuclease SbcCD subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KM67 6.18e-18 93 28 7 271 3 sbcC Nuclease SbcCD subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q97FK1 1.89e-26 121 24 24 638 3 sbcC Nuclease SbcCD subunit C Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q4L655 1.72e-25 118 45 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus haemolyticus (strain JCSC1435)
Q4L655 1.87e-07 59 25 5 188 3 sbcC Nuclease SbcCD subunit C Staphylococcus haemolyticus (strain JCSC1435)
Q9RT44 7.46e-24 112 45 1 114 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9RT44 6.01e-18 93 35 6 185 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q5HPJ3 1.58e-23 112 43 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5HPJ3 3.31e-10 68 27 6 203 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CPC5 1.66e-23 111 43 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q8CPC5 2.53e-10 68 27 6 202 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q6G9L2 1.11e-22 109 41 5 160 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MSSA476)
Q6G9L2 1.2e-10 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MSSA476)
Q49XE1 2.38e-22 108 42 6 149 3 sbcC Nuclease SbcCD subunit C Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q49XE1 1.1e-07 60 26 8 194 3 sbcC Nuclease SbcCD subunit C Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q6GH60 3.55e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MRSA252)
Q6GH60 3.89e-10 68 24 5 218 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MRSA252)
Q2YXX0 4.21e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2YXX0 1.3e-10 69 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A5S6 4.29e-22 107 44 4 137 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain N315)
Q7A5S6 7.51e-11 70 25 5 216 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain N315)
Q99UD0 4.29e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q99UD0 7.51e-11 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu50 / ATCC 700699)
A5ISM9 4.29e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH9)
A5ISM9 7.51e-11 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH9)
A6U1G7 4.29e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH1)
A6U1G7 7.51e-11 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH1)
A7X203 4.29e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu3 / ATCC 700698)
A7X203 7.51e-11 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q2FH88 5.3e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300)
Q2FH88 1.08e-10 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300)
A8Z219 5.4e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300 / TCH1516)
A8Z219 1.06e-10 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300 / TCH1516)
A6QGP8 5.4e-22 107 44 4 137 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Newman)
A6QGP8 1.06e-10 70 25 5 216 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Newman)
Q5HG72 5.4e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain COL)
Q5HG72 1.06e-10 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain COL)
Q8NWV1 5.54e-22 107 44 4 137 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MW2)
Q8NWV1 1.15e-10 70 25 5 216 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MW2)
O83635 7.56e-22 106 42 5 137 3 sbcC Nuclease SbcCD subunit C Treponema pallidum (strain Nichols)
O83635 2e-08 62 27 5 218 3 sbcC Nuclease SbcCD subunit C Treponema pallidum (strain Nichols)
Q2FYT3 2.92e-21 104 43 4 137 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FYT3 1.08e-10 70 25 5 216 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain NCTC 8325 / PS 47)
O67124 4e-21 103 36 2 146 3 rad50 Probable DNA double-strand break repair Rad50 ATPase Aquifex aeolicus (strain VF5)
O67124 3.79e-14 81 28 7 227 3 rad50 Probable DNA double-strand break repair Rad50 ATPase Aquifex aeolicus (strain VF5)
Q9CFZ0 2.9e-19 98 46 3 112 3 sbcC Nuclease SbcCD subunit C Lactococcus lactis subsp. lactis (strain IL1403)
Q9CFZ0 1.73e-09 66 31 7 180 3 sbcC Nuclease SbcCD subunit C Lactococcus lactis subsp. lactis (strain IL1403)
O06714 4.23e-13 78 36 4 173 3 sbcC Nuclease SbcCD subunit C Bacillus subtilis (strain 168)
Q58718 9.13e-09 63 25 4 176 1 rad50 DNA double-strand break repair Rad50 ATPase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9X1X1 7.04e-08 60 28 6 148 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9X1X1 5.73e-05 51 28 4 141 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q8TXI4 1.57e-07 59 22 12 392 3 rad50 DNA double-strand break repair Rad50 ATPase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
P58302 6.37e-07 57 26 4 162 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
P62134 7.61e-07 57 24 9 251 3 rad50 DNA double-strand break repair Rad50 ATPase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
P11109 1.29e-05 53 25 5 216 2 D13 Probable exonuclease subunit 2 Escherichia phage T5
Q9HLR8 0.000137 50 28 7 166 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q9CU62 0.000308 48 28 7 176 1 Smc1a Structural maintenance of chromosomes protein 1A Mus musculus
O97593 0.000313 48 28 7 176 1 SMC1A Structural maintenance of chromosomes protein 1A Bos taurus
Q9Z1M9 0.000318 48 28 7 176 1 Smc1a Structural maintenance of chromosomes protein 1A Rattus norvegicus
Q14683 0.000324 48 28 7 176 1 SMC1A Structural maintenance of chromosomes protein 1A Homo sapiens
O58687 0.000831 47 22 8 224 3 rad50 DNA double-strand break repair Rad50 ATPase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00240
Feature type CDS
Gene -
Product AAA family ATPase
Location 73768 - 77493 (strand: -1)
Length 3726 (nucleotides) / 1241 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2269
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF13476 AAA domain
PF13558 SbcC/RAD50-like, Walker B motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0419 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD ATPase subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03546 DNA repair protein SbcC/Rad50 - -

Protein Sequence

MKILSLRFKNINSLKGEWKINFDQEPFVSNGLFAITGPTGAGKTTLLDAISLALYHRTPRLDKVTQSQNELMTRHTAECLAEVEFEVKGVAYRAFWEQRRANYKEEGNLQAPQAELAKINRLGGEDKVLANKISQVKEKIISITGLDFDRFTKSMLLSQGQFAAFLNADDKSRAELLEELTGTDIYRHISQTIFKHWREEEQALNTLKQQAQMMALLDATTRQELLTQQANIQTQITRLQKEQQEYQVAKQWQEKALEIQQQQQSAQAGLYEAQQALIIAQPDIQRLEKNEPAEKIRPLYDEKNRRLTEQNYLATQLTSLKTEKQAIEQQSLPINKKLAAFHEQLKTHHEKKQHTLQLIREKVLPLDNQLVLLQQEISTNNQHKHKLEKICAEYLQHSQLAEKKLITTQQQVNQLNNDLTQHAYHAQLAENLPLWQHYFQQYNEISNQYLANQKRETAEQEKVISLEKALQQATQTLATQQEQLNLQQQQLQSYQTQLEARQKADKPDEIKPRLQQINLQKNALAKIINLHTQLQRNGKEQQHYQTTLSENQQKIATLTQTIAENDLALKEKAQHLKDLNDNYLLLQKVAEYEQERARLLKDKPCPLCGSTQHPYVETYHDIKPDETKLRLEALQQQVHSLTITLAEQRTQLVNYGSQNSTLSDNIAQLTQENSVLTQQWQTLAQAHHLPLVDDADNLLTLEQSLNQQELILTEKLDSYQQLEAQTHQKNTHFLNAKEQFNQQQQSVKQQQNDLDYLQKTIKTYQQQSEHLHQQQQQLAQHIQSAIEKQGYTLPEFEQFTPWLAARQQEHQQYQSQLKELQLLQQSLREQQVTQNEKKRYLAEKQAELEALLAKLSQQQHQQTQWQDQRQALFGSQSVEQVRSELDKHSQFLQTQIEQYTQEKNQLENRLNQLIGQYQENEKALQRAITQAQQATEHYQHALKESLFADENDFLASLLSVEERTRLQEQQKQRLDKLLQEKTRLETQEKAYQQHLLQQPLLSTQCTAEQCNIHLDDLAKQHKALQETLFSLQIQLRQDDEKRIEQQTLLAQIAKQQAHYDDWSYLNELVGSASGDKFSRFAQGLTLDHLIYLANRRLEKLHGRYFLQRKTTGSLELQIADTWQADALRDTRTLSGGESFLVSLSLALALSDLVSNKTQIESLFLDEGFGTLDPDTLDIALDALDSLNASGKIIGVISHVEAMKERIPVQIKVKKAGGLGISQLAPEFRYGNKSNENQSVKD

Flanking regions ( +/- flanking 50bp)

CTCTTTAAGCAAGCGGTTGAAATGGCAGAGCAAGAGGATAACAACGCACGATGAAAATCTTAAGTCTGCGCTTTAAAAACATTAACTCACTCAAAGGCGAATGGAAAATTAACTTTGATCAAGAGCCTTTTGTTAGCAATGGACTATTTGCCATTACAGGCCCGACAGGTGCGGGTAAAACCACGCTCTTAGATGCAATTAGTTTAGCGTTATATCACAGAACGCCACGCTTAGATAAAGTAACCCAATCTCAAAATGAATTAATGACTCGTCACACTGCAGAATGTTTAGCTGAAGTGGAATTTGAAGTTAAAGGGGTTGCCTATCGGGCATTTTGGGAACAACGTCGTGCGAATTATAAAGAAGAGGGAAACTTACAAGCCCCACAGGCTGAGTTAGCAAAAATTAATCGTTTAGGCGGTGAAGATAAAGTTTTAGCCAATAAAATTAGCCAAGTAAAAGAAAAAATAATCTCGATCACCGGATTAGATTTCGATCGCTTCACTAAATCCATGTTGTTATCACAAGGGCAATTTGCTGCATTTCTCAACGCTGATGACAAATCTCGTGCAGAGCTACTTGAAGAGCTTACTGGTACAGATATCTATCGCCATATTTCACAAACAATTTTTAAACATTGGCGCGAAGAAGAGCAGGCTTTAAACACGCTAAAACAACAAGCTCAAATGATGGCATTATTGGATGCAACAACACGCCAAGAGCTATTAACACAACAAGCCAATATTCAAACACAAATAACAAGGTTACAAAAAGAGCAACAGGAATACCAAGTTGCTAAGCAATGGCAAGAAAAAGCGCTAGAAATTCAGCAACAACAACAATCAGCCCAAGCGGGACTCTATGAGGCTCAACAGGCATTAATTATTGCTCAACCCGATATTCAACGCTTAGAAAAAAATGAGCCAGCAGAAAAAATTCGCCCTCTTTATGATGAAAAAAATCGTCGTCTTACAGAGCAAAACTATTTAGCAACACAGTTAACAAGCTTAAAAACAGAAAAACAGGCTATTGAACAACAAAGCCTACCTATCAATAAAAAATTGGCAGCCTTTCATGAACAATTAAAAACGCATCATGAGAAAAAACAGCACACTTTACAGTTAATTCGTGAGAAGGTACTGCCTTTAGATAATCAATTGGTGCTGTTACAACAAGAAATTAGTACTAATAACCAACACAAGCATAAATTAGAAAAAATATGCGCTGAATATCTGCAACATTCTCAGTTAGCCGAGAAAAAATTAATCACCACACAACAACAAGTTAATCAATTAAATAACGACTTAACACAACACGCCTATCATGCACAACTTGCGGAAAATCTACCCTTATGGCAACACTATTTTCAGCAATATAATGAAATATCAAACCAATATCTTGCCAACCAAAAACGAGAAACAGCAGAGCAGGAAAAAGTCATAAGTTTGGAAAAAGCATTACAACAAGCTACCCAAACATTAGCCACCCAACAAGAGCAACTTAATTTACAGCAACAGCAACTACAATCTTATCAAACACAATTGGAAGCGCGTCAAAAAGCAGACAAACCCGATGAAATAAAACCGCGATTACAACAAATTAATCTGCAAAAAAATGCATTGGCAAAAATTATAAATTTACACACTCAATTACAACGTAATGGCAAAGAGCAGCAACATTATCAAACTACATTGAGTGAAAATCAGCAAAAAATAGCGACTCTAACCCAAACGATTGCAGAAAATGATCTGGCACTAAAAGAGAAAGCACAACATCTTAAAGATTTAAATGACAACTATCTTTTGCTACAAAAAGTCGCCGAATATGAGCAAGAGCGTGCACGTTTACTGAAAGATAAACCTTGCCCTCTATGTGGCTCAACACAGCATCCTTATGTAGAAACCTATCATGACATCAAACCAGATGAGACAAAGCTACGTTTAGAAGCATTACAACAGCAGGTGCATTCACTCACCATCACCTTAGCCGAACAGCGAACCCAACTGGTAAACTATGGCTCACAAAATAGCACCTTGAGTGACAATATCGCTCAGTTAACCCAAGAGAATAGCGTACTGACCCAACAGTGGCAGACGTTAGCACAAGCACACCATTTACCGTTAGTTGATGATGCAGATAACTTACTGACATTAGAACAATCATTAAATCAGCAAGAGCTTATTCTCACAGAAAAACTTGACAGTTATCAGCAATTAGAAGCCCAAACACATCAAAAGAATACGCATTTTCTCAATGCAAAAGAGCAATTTAATCAACAACAACAATCGGTTAAGCAACAGCAAAATGATTTAGATTATTTGCAAAAAACAATCAAAACCTATCAGCAACAAAGCGAGCACTTGCACCAACAGCAACAACAATTAGCACAACATATTCAGTCAGCGATTGAAAAACAAGGCTATACACTCCCTGAATTTGAGCAGTTCACGCCATGGTTGGCAGCTCGTCAACAAGAGCACCAGCAATATCAAAGTCAGTTAAAAGAGCTTCAGCTATTACAACAAAGCCTACGTGAACAGCAAGTGACGCAAAATGAAAAAAAACGTTATTTAGCAGAAAAACAGGCTGAACTTGAGGCGCTATTAGCAAAATTAAGCCAACAACAGCACCAACAAACACAATGGCAGGATCAACGACAAGCCTTATTTGGTTCACAATCTGTAGAGCAGGTACGTAGTGAACTTGATAAACATAGCCAATTTTTACAAACCCAGATTGAGCAATATACTCAAGAAAAAAACCAACTCGAAAACCGACTTAATCAATTAATTGGCCAATATCAAGAGAATGAAAAAGCCCTACAACGAGCAATAACACAAGCACAACAAGCCACTGAACACTATCAACACGCGTTAAAAGAGAGTCTTTTTGCCGATGAAAATGACTTTTTAGCCTCTCTATTATCGGTAGAGGAAAGAACACGTCTACAAGAGCAGCAAAAACAGCGACTTGATAAACTTTTACAAGAAAAAACGCGCCTTGAGACTCAAGAAAAAGCCTATCAACAACATTTATTACAACAACCATTACTCTCAACCCAATGTACTGCTGAGCAATGTAATATCCATTTAGACGACTTAGCAAAGCAACACAAAGCGTTGCAAGAAACACTATTTAGTCTGCAAATACAATTACGCCAAGATGATGAAAAACGGATAGAGCAACAAACACTATTAGCGCAAATAGCCAAACAGCAAGCGCATTATGATGATTGGAGTTATTTAAATGAGTTAGTTGGCTCTGCATCTGGTGATAAATTTAGTCGCTTTGCCCAAGGGTTAACCCTCGACCATCTTATCTATCTGGCTAATCGTCGCTTAGAAAAACTACATGGTCGTTACTTTTTACAACGCAAAACGACAGGTAGCCTTGAATTACAGATTGCCGATACATGGCAAGCAGATGCTCTACGCGATACACGTACACTTTCTGGTGGAGAGAGTTTTTTAGTCAGCTTATCCCTTGCCTTAGCGTTATCTGATTTAGTCAGTAATAAGACGCAAATTGAGTCACTCTTTTTAGATGAAGGCTTTGGCACCCTCGATCCTGATACACTAGATATTGCTTTAGATGCCTTAGATAGCCTTAATGCTTCTGGCAAAATTATTGGTGTGATCAGTCATGTTGAAGCGATGAAAGAGCGTATTCCGGTACAAATAAAAGTGAAAAAAGCGGGGGGTTTAGGAATAAGTCAGCTAGCACCTGAGTTTAGATATGGTAATAAGAGCAATGAAAATCAATCAGTTAAAGACTAGCTCTAATAATTTGATGTAAGTGGTTAAAATTTTTAGATATCAATAAATCA