Homologs in group_2256

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_17275 EHELCC_17275 100.0 Morganella morganii S2 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
NLDBIP_17920 NLDBIP_17920 100.0 Morganella morganii S4 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
LHKJJB_17840 LHKJJB_17840 100.0 Morganella morganii S3 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
HKOGLL_17850 HKOGLL_17850 100.0 Morganella morganii S5 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
F4V73_RS16555 F4V73_RS16555 90.5 Morganella psychrotolerans ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
PMI_RS00390 PMI_RS00390 69.7 Proteus mirabilis HI4320 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

Distribution of the homologs in the orthogroup group_2256

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2256

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P25539 0.0 516 66 0 363 1 ribD Riboflavin biosynthesis protein RibD Escherichia coli (strain K12)
P44326 6.59e-136 395 52 3 367 3 ribD Riboflavin biosynthesis protein RibD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AB0 1.96e-127 373 46 1 364 3 ribD Riboflavin biosynthesis protein RibD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P17618 6.76e-96 293 42 4 369 1 ribD Riboflavin biosynthesis protein RibD Bacillus subtilis (strain 168)
P70814 2.64e-94 289 43 7 372 3 ribD Riboflavin biosynthesis protein RibD Bacillus amyloliquefaciens
O66534 8.82e-84 261 43 2 326 3 ribD Riboflavin biosynthesis protein RibD Aquifex aeolicus (strain VF5)
P50853 2.36e-80 253 39 6 382 3 ribD Riboflavin biosynthesis protein RibD Actinobacillus pleuropneumoniae
Q9Z735 2.85e-76 243 41 4 334 3 ribD Riboflavin biosynthesis protein RibD Chlamydia pneumoniae
O84735 5.03e-70 227 36 5 358 3 ribD Riboflavin biosynthesis protein RibD Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q55158 1.48e-69 225 37 7 376 3 ribD Riboflavin biosynthesis protein RibD Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9PLJ6 7.72e-67 218 36 5 363 3 ribD Riboflavin biosynthesis protein RibD Chlamydia muridarum (strain MoPn / Nigg)
Q8K9A4 3.04e-65 206 58 0 145 3 ribD1 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57533 3.28e-65 206 61 0 146 3 ribD1 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P9WPH1 1.14e-59 199 38 9 368 1 ribD Riboflavin biosynthesis protein RibD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPH0 1.14e-59 199 38 9 368 3 ribD Riboflavin biosynthesis protein RibD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8K9A3 1.44e-58 192 41 0 211 3 ribD2 5-amino-6-(5-phosphoribosylamino)uracil reductase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q8GWP5 2.24e-54 187 54 0 157 1 PYRD Riboflavin biosynthesis protein PYRD, chloroplastic Arabidopsis thaliana
B6TRH4 6.11e-51 177 56 0 157 2 PYRD Riboflavin biosynthesis protein PYRD, chloroplastic Zea mays
P57534 9.17e-44 153 37 0 204 3 ribD2 5-amino-6-(5-phosphoribosylamino)uracil reductase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O24750 6.39e-42 152 36 8 314 3 ribD Riboflavin biosynthesis protein RibD Corynebacterium ammoniagenes
Q9STY4 1.26e-33 134 29 10 378 1 PYRR Riboflavin biosynthesis protein PYRR, chloroplastic Arabidopsis thaliana
K7WIZ6 2.95e-31 128 28 7 349 1 PYRR Riboflavin biosynthesis protein PYRR, chloroplastic Zea mays
O26337 3.14e-17 82 29 4 217 1 MTH_235 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
O28272 1.54e-16 80 28 2 183 3 AF_2007 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q58085 3.39e-16 80 32 5 189 1 arfC 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P68397 4.39e-13 70 34 6 170 3 tadA tRNA-specific adenosine deaminase Shigella flexneri
P68398 4.39e-13 70 34 6 170 1 tadA tRNA-specific adenosine deaminase Escherichia coli (strain K12)
Q8FF24 8.95e-13 69 34 6 170 3 tadA tRNA-specific adenosine deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XA44 8.95e-13 69 34 6 170 3 tadA tRNA-specific adenosine deaminase Escherichia coli O157:H7
Q7CQ08 3.53e-10 62 32 5 153 3 tadA tRNA-specific adenosine deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XGY4 3.53e-10 62 32 5 153 3 tadA tRNA-specific adenosine deaminase Salmonella typhi
P21335 3.64e-10 61 31 4 156 1 tadA tRNA-specific adenosine deaminase Bacillus subtilis (strain 168)
P87241 1.28e-09 62 33 4 137 3 rib2 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q89AM8 6.88e-09 57 30 8 159 3 tadA tRNA-specific adenosine deaminase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P95872 7.34e-09 58 23 6 213 3 SSO2097 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q99W51 4.21e-08 55 27 5 158 1 tadA tRNA-specific adenosine deaminase Staphylococcus aureus (strain Mu50 / ATCC 700699)
P44931 1.3e-07 54 32 8 160 3 tadA tRNA-specific adenosine deaminase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O66747 1.73e-07 55 25 5 212 1 ribD2 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Aquifex aeolicus (strain VF5)
Q6FU96 3.89e-07 54 26 5 195 1 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
P57343 1.46e-05 48 25 7 165 3 tadA tRNA-specific adenosine deaminase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8P2R7 1.48e-05 48 37 3 80 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M18 (strain MGAS8232)
P68999 1.52e-05 48 37 3 80 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M1
P0DA21 1.63e-05 48 37 3 80 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M3 (strain SSI-1)
Q5XE14 1.63e-05 48 37 3 80 1 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DA20 1.63e-05 48 37 3 80 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
P33312 1.79e-05 49 24 6 211 1 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q757H6 4.75e-05 47 26 7 196 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
Q9P4B8 9.02e-05 47 22 7 204 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Kluyveromyces marxianus
Q72IF6 0.000309 46 35 4 124 3 tilS tRNA(Ile)-lysidine synthase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q5SI38 0.000318 46 35 4 124 3 tilS tRNA(Ile)-lysidine synthase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q9S7I0 0.000691 45 36 5 104 1 TADA tRNA(adenine(34)) deaminase, chloroplastic Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17380
Feature type CDS
Gene ribD
Product bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
Location 6687 - 7799 (strand: -1)
Length 1113 (nucleotides) / 370 (amino acids)

Contig

Accession contig_28
Length 42791 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2256
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region
PF01872 RibD C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0117 Coenzyme transport and metabolism (H) H Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors
Quorum sensing		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Protein Sequence

MMHSDEFYMARALELAALGRFTTAPNPNVGCVIVRDGEIVGEGYHQRAGEPHAEVHALRMAGDKARGATAYVTLEPCSHHGRTPPCAEALINAGVSRVVAAMQDPNPQVAGRGLFKLREAGIEVSHGVLMQEAEALNKGFFKRMRTGFPYIQLKMAASIDGKTALANGESQWITSKAARQDVQQFRAQAGAILSTSATVLADDPGLTVRHADFPASLQQSYPEADIRQPVRIITDSRQRVTAQHRVTQLPGSCWLARTASQPDNWQGDVEEMILPENGSGVDLVLLMMQLGKRNINHIWTECGSHMAGALLKAGLADEIVLYLAPKILGSDAQDLFTLPPLAHLRDAPQLRIDDCTMVGPDLRLRLIPVY

Flanking regions ( +/- flanking 50bp)

GAGGATATCCGTGAATTCGGCGAGGAAATTGCCCGCCTGCAGGACTGAACATGATGCATTCTGATGAATTTTATATGGCCCGCGCCCTTGAACTGGCGGCGCTGGGTCGTTTTACCACGGCGCCGAACCCGAATGTCGGCTGTGTGATTGTCCGTGACGGCGAAATTGTTGGTGAAGGTTACCATCAGCGTGCCGGTGAACCGCATGCGGAAGTGCATGCGCTGCGCATGGCCGGTGATAAAGCCCGTGGCGCCACCGCGTATGTCACACTGGAGCCGTGCAGTCACCACGGCCGTACACCGCCGTGTGCCGAAGCGCTGATAAATGCCGGCGTCAGCCGGGTGGTGGCCGCCATGCAGGATCCGAATCCGCAGGTGGCCGGGCGCGGTCTGTTTAAACTGCGCGAAGCGGGTATTGAAGTCAGTCACGGCGTACTGATGCAGGAAGCGGAAGCCCTGAATAAGGGCTTCTTTAAGCGGATGCGTACCGGTTTCCCGTATATTCAGCTGAAAATGGCAGCGTCGATTGACGGTAAAACCGCATTAGCCAACGGCGAAAGCCAGTGGATCACCTCAAAAGCCGCGCGGCAGGATGTGCAGCAGTTCCGTGCACAGGCCGGGGCGATTTTATCCACCAGTGCCACGGTTCTGGCAGATGATCCGGGCCTGACTGTCCGTCATGCGGATTTCCCGGCATCGTTGCAGCAGAGCTATCCGGAGGCGGATATCCGTCAGCCGGTGCGGATTATCACAGACAGCCGTCAGCGGGTGACCGCTCAGCACCGCGTCACACAATTGCCGGGCAGTTGCTGGCTGGCGCGGACCGCTTCTCAGCCGGATAACTGGCAGGGTGACGTTGAGGAAATGATCCTGCCGGAGAACGGCAGTGGTGTGGATCTGGTTCTGCTGATGATGCAGCTCGGCAAACGCAATATTAACCATATCTGGACAGAGTGCGGCTCACATATGGCGGGCGCACTGCTGAAAGCCGGACTGGCGGATGAAATCGTGCTTTATCTGGCACCGAAGATTCTGGGCAGTGATGCACAGGATCTCTTTACACTGCCGCCGCTTGCGCATCTGCGTGATGCGCCGCAGCTGCGGATCGACGACTGCACGATGGTCGGGCCGGATCTCCGCCTGCGGCTGATCCCGGTTTATTAACCTCTGAATTTACGCCGGAATTTAATTTTTATTCCGGAGTTTGAAAAACA