Orthogroup:group_2256


Homologs in group_2256

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17380 FBDBKF_17380 Morganella morganii S1 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
EHELCC_17275 EHELCC_17275 Morganella morganii S2 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
NLDBIP_17920 NLDBIP_17920 Morganella morganii S4 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
LHKJJB_17840 LHKJJB_17840 Morganella morganii S3 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
HKOGLL_17850 HKOGLL_17850 Morganella morganii S5 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
F4V73_RS16555 F4V73_RS16555 Morganella psychrotolerans ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
PMI_RS00390 PMI_RS00390 Proteus mirabilis HI4320 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

Distribution of group_2256 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2256 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2256

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2256.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ribD 7

Product

# Product Occurence
1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0117 7 H Coenzyme transport and metabolism (H) Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11752 7 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors
Quorum sensing		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00383 7 Cytidine and deoxycytidylate deaminase zinc-binding region
PF01872 7 RibD C-terminal domain

Annotations of the 66 SwissProt hits

Annotation Number of occurrences
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase 11
5-amino-6-(5-phosphoribosylamino)uracil reductase 2
Cytosine deaminase 2
Deoxycytidylate deaminase 6
Diaminohydroxyphosphoribosylamino-pyrimidine deaminase 3
Riboflavin biosynthesis protein PYRD, chloroplastic 2
Riboflavin biosynthesis protein PYRR, chloroplastic 2
Riboflavin biosynthesis protein RibD 14
tRNA(Ile)-lysidine synthase 2
tRNA(adenine(34)) deaminase, chloroplastic 1
tRNA-specific adenosine deaminase 20
tRNA-specific adenosine deaminase subunit tad2 1

Protein length

Min length 369
Max length 385
Mean length (sd) 372.0 (5.7)
Median length 370.0

Protein length distribution