Homologs in group_125

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12390 FBDBKF_12390 23.8 Morganella morganii S1 - Primosomal protein I
FBDBKF_18710 FBDBKF_18710 24.2 Morganella morganii S1 - Primosomal protein I
EHELCC_15285 EHELCC_15285 24.2 Morganella morganii S2 - Primosomal protein I
EHELCC_19155 EHELCC_19155 23.8 Morganella morganii S2 - Primosomal protein I
NLDBIP_15815 NLDBIP_15815 24.2 Morganella morganii S4 - Primosomal protein I
NLDBIP_19125 NLDBIP_19125 23.8 Morganella morganii S4 - Primosomal protein I
LHKJJB_16025 LHKJJB_16025 24.2 Morganella morganii S3 - Primosomal protein I
LHKJJB_19015 LHKJJB_19015 23.8 Morganella morganii S3 - Primosomal protein I
HKOGLL_15145 HKOGLL_15145 24.2 Morganella morganii S5 - Primosomal protein I
PMI_RS02395 PMI_RS02395 26.3 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_125

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_125

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75978 2.57e-16 81 61 0 55 3 ymfN Protein YmfN Escherichia coli (strain K12)
P76065 7.77e-06 49 33 4 99 4 ydaU Uncharacterized protein YdaU Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12880
Feature type CDS
Gene -
Product Phage terminase, large subunit
Location 80806 - 81588 (strand: -1)
Length 783 (nucleotides) / 260 (amino acids)

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_125
Orthogroup size 11
N. genomes 6

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Genomic region

Domains

PF13730 Helix-turn-helix domain

Protein Sequence

MIMVRLADFSSDEGISYPSVETLSRQIGAGVSTIRDACSELEKDGWLRKKQRRNGNRNASNLYFLNVDKLETIALQEIAKLKKQRENNAISHPPVSDGSESDRSENSNSGRFDPPDSGVKGGFHPPESGGDPSVNSKHDPSVNSKEDPKPATQKKSTVKFDPLSVRPENVSELVWQDWVKFRKEIKKPLTETSCRQIGKKLAGHPDPDSVLCDSIANGWQGIFPERTTARKPAKPSTHFGFSDKNYESRSAAWVNGGKHV

Flanking regions ( +/- flanking 50bp)

GTTACGTATGGGATGCCTGCGCCGTTTCAGGTGTGAAAGGCACAAAACTGATGATTATGGTTCGCCTGGCTGATTTCTCCAGTGATGAAGGGATCAGCTATCCGAGCGTAGAAACACTGTCCCGGCAGATTGGGGCAGGAGTCAGCACTATCCGCGATGCATGCAGTGAGCTTGAAAAGGATGGCTGGCTGAGGAAAAAACAACGCCGGAACGGTAACCGCAACGCATCGAATTTATATTTTCTCAATGTCGATAAGTTGGAAACTATCGCGTTACAGGAAATCGCAAAGCTGAAAAAACAGCGTGAAAATAACGCAATTTCTCACCCTCCAGTTTCTGACGGTTCAGAATCCGACCGGTCAGAAAACAGTAATTCCGGGCGTTTTGACCCTCCGGATTCTGGCGTTAAAGGGGGTTTTCACCCTCCAGAATCTGGAGGCGATCCATCAGTAAATTCAAAACATGATCCATCAGTAAATTCAAAAGAGGATCCGAAGCCTGCGACGCAGAAAAAATCCACGGTGAAATTTGACCCGTTGTCAGTCCGTCCGGAAAACGTCAGTGAACTTGTCTGGCAGGATTGGGTGAAGTTCCGGAAGGAGATTAAAAAACCACTGACGGAAACCAGCTGCAGGCAGATTGGCAAAAAGCTGGCCGGGCATCCGGATCCTGATTCTGTGCTGTGTGACTCGATTGCCAACGGCTGGCAGGGAATATTCCCGGAACGCACCACAGCGCGGAAACCGGCTAAGCCGAGCACACACTTCGGATTCAGCGATAAAAACTACGAGAGCCGCTCAGCGGCATGGGTGAACGGGGGCAAGCATGTCTGACGAACTGAACGTGAACATTCCACCGCGCTTTGCTGCAGCGACATTTGAGA