Homologs in group_208

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03010 FBDBKF_03010 28.8 Morganella morganii S1 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
EHELCC_07525 EHELCC_07525 28.8 Morganella morganii S2 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
NLDBIP_07850 NLDBIP_07850 28.8 Morganella morganii S4 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
LHKJJB_07385 LHKJJB_07385 28.8 Morganella morganii S3 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
HKOGLL_03545 HKOGLL_03545 28.8 Morganella morganii S5 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
F4V73_RS11905 F4V73_RS11905 29.4 Morganella psychrotolerans - DedA family protein
PMI_RS18410 PMI_RS18410 29.4 Proteus mirabilis HI4320 - DedA family protein

Distribution of the homologs in the orthogroup group_208

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_208

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33366 2.13e-37 130 46 0 141 1 yohD Inner membrane protein YohD Escherichia coli (strain K12)
Q55705 6.64e-09 56 27 4 176 3 slr0232 Uncharacterized membrane protein slr0232 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O69601 5.66e-05 45 28 3 137 3 ML0287 Uncharacterized membrane protein ML0287 Mycobacterium leprae (strain TN)
P9WP09 0.000238 43 32 3 113 1 Rv0364 Uncharacterized membrane protein Rv0364 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP08 0.000238 43 32 3 113 3 MT0380 Uncharacterized membrane protein MT0380 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0AA66 0.00065 42 26 4 129 3 yqjA Inner membrane protein YqjA Shigella flexneri
P0AA63 0.00065 42 26 4 129 1 yqjA Inner membrane protein YqjA Escherichia coli (strain K12)
P0AA64 0.00065 42 26 4 129 3 yqjA Inner membrane protein YqjA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AA65 0.00065 42 26 4 129 3 yqjA Inner membrane protein YqjA Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12515
Feature type CDS
Gene dedA
Product Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
Location 19592 - 20143 (strand: 1)
Length 552 (nucleotides) / 183 (amino acids)
In genomic island -

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_208
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF09335 VTT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0586 Cell wall/membrane/envelope biogenesis (M) M Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03975 membrane-associated protein - -

Protein Sequence

METLLTHWITEYGYWATFFGTMIEGETAAFLSGIAAHHQLLSYPKVMLVAALGGIISDNVLFFTGYFAGNRILPRIHKHADKIARLQRIIHRRESLIIIGIRFAYGLRTIGPVIIGAAGINPLKFFVLNILGGALWGSVIVSAGYFISAAILALPLHTYLAWFLILAAVAGLFVLIRKHKFTL

Flanking regions ( +/- flanking 50bp)

TGGGATTATGTATTAATATCTCCGCCGGTTTATTTTAAACGGAGTGGCGGATGGAAACATTACTGACACACTGGATTACAGAATACGGCTATTGGGCAACCTTTTTCGGTACCATGATCGAAGGGGAAACCGCTGCATTTTTGTCCGGCATTGCTGCACACCATCAGTTATTATCCTATCCGAAAGTGATGCTGGTGGCCGCACTGGGCGGAATTATCAGTGACAATGTTCTGTTTTTTACCGGTTATTTTGCCGGAAACCGGATCCTTCCCCGCATTCATAAACATGCGGATAAAATAGCCCGTCTGCAACGGATAATTCACCGCCGTGAAAGCCTGATTATTATCGGAATACGTTTCGCTTACGGATTAAGGACTATCGGCCCCGTTATTATCGGCGCCGCCGGTATTAATCCGCTGAAATTTTTTGTGCTGAATATTCTCGGCGGAGCACTATGGGGAAGCGTTATTGTCTCTGCGGGGTATTTTATCAGCGCGGCAATCCTTGCCCTGCCGCTGCATACTTACCTTGCCTGGTTCCTTATCCTCGCGGCGGTTGCCGGTCTGTTTGTGCTGATAAGAAAGCATAAATTCACGCTGTAAACTGCGGAACAAACCCGCCCGTCAGCCACTATTCCGGCTTGCGGGCGCTG