Homologs in group_1605

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_14825 EHELCC_14825 100.0 Morganella morganii S2 yjcH DUF485 domain-containing protein
NLDBIP_14655 NLDBIP_14655 100.0 Morganella morganii S4 yjcH DUF485 domain-containing protein
LHKJJB_14690 LHKJJB_14690 100.0 Morganella morganii S3 yjcH DUF485 domain-containing protein
HKOGLL_13310 HKOGLL_13310 100.0 Morganella morganii S5 yjcH DUF485 domain-containing protein
F4V73_RS14200 F4V73_RS14200 87.4 Morganella psychrotolerans - DUF485 domain-containing protein
PMI_RS15030 PMI_RS15030 70.9 Proteus mirabilis HI4320 - DUF485 domain-containing protein

Distribution of the homologs in the orthogroup group_1605

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1605

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AF55 2.87e-38 126 57 0 102 3 yjcH Inner membrane protein YjcH Shigella flexneri
P0AF54 2.87e-38 126 57 0 102 1 yjcH Inner membrane protein YjcH Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_10490
Feature type CDS
Gene yjcH
Product DUF485 domain-containing protein
Location 54792 - 55103 (strand: 1)
Length 312 (nucleotides) / 103 (amino acids)

Contig

Accession contig_12
Length 141735 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1605
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04341 Protein of unknown function, DUF485

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3162 Function unknown (S) S Uncharacterized membrane protein, DUF485 family

Protein Sequence

MSASIYQQVENDPRFQELVRKRSRFSWTLSAITLVLYVSFIILIAFDPQWLGTPLGEGLTITRGIPVGVGLIVSAFVLTGIYTIRANGEFDRLTAEIISGVKQ

Flanking regions ( +/- flanking 50bp)

CATTGTGCGGCACTGACACTCCGGATAACAAAAACAGAGGAGTATCCTCAATGAGCGCATCCATTTATCAGCAGGTGGAGAACGACCCTCGCTTTCAGGAACTGGTCAGAAAGCGCAGTCGGTTCTCATGGACATTGTCCGCTATCACACTTGTGCTGTATGTCAGCTTTATTATTCTGATTGCATTTGACCCGCAATGGCTGGGTACGCCACTCGGCGAAGGTCTGACGATTACCCGCGGGATACCTGTCGGCGTCGGGCTGATTGTCAGTGCGTTTGTCCTGACCGGTATTTATACCATCCGCGCAAACGGTGAATTCGACCGTCTGACCGCCGAAATCATCAGCGGGGTGAAACAATGAAAATGCGCCTTTCTGCTCTTCTGTTATCCCTGCTGTTTCCGCTGCTCAGT