Homologs in group_1612

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_04940 EHELCC_04940 100.0 Morganella morganii S2 nrdH Glutaredoxin
NLDBIP_04940 NLDBIP_04940 100.0 Morganella morganii S4 nrdH Glutaredoxin
LHKJJB_13690 LHKJJB_13690 100.0 Morganella morganii S3 nrdH Glutaredoxin
HKOGLL_12845 HKOGLL_12845 100.0 Morganella morganii S5 nrdH Glutaredoxin
F4V73_RS00200 F4V73_RS00200 94.4 Morganella psychrotolerans nrdH glutaredoxin-like protein NrdH
PMI_RS02050 PMI_RS02050 50.0 Proteus mirabilis HI4320 nrdH glutaredoxin-like protein NrdH

Distribution of the homologs in the orthogroup group_1612

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1612

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC68 9.23e-18 72 41 0 72 3 nrdH Glutaredoxin-like protein NrdH Shigella flexneri
P0AC65 9.23e-18 72 41 0 72 1 nrdH Glutaredoxin-like protein NrdH Escherichia coli (strain K12)
P0AC66 9.23e-18 72 41 0 72 3 nrdH Glutaredoxin-like protein NrdH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC67 9.23e-18 72 41 0 72 3 nrdH Glutaredoxin-like protein NrdH Escherichia coli O157:H7
Q56108 2.03e-15 67 37 0 72 3 nrdH Glutaredoxin-like protein NrdH Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q48708 4.48e-11 55 34 0 70 1 nrdH Glutaredoxin-like protein NrdH Lactococcus lactis subsp. cremoris (strain MG1363)
Q9CGW5 7.41e-11 55 34 0 70 3 nrdH Glutaredoxin-like protein NrdH Lactococcus lactis subsp. lactis (strain IL1403)
Q05266 2.3e-07 47 34 2 72 4 56 Gene 56 protein Mycobacterium phage L5
O64247 1.75e-06 44 32 3 74 4 56 Gene 56 protein Mycobacterium phage D29
P23171 2.12e-05 41 30 1 71 3 None Uncharacterized glutaredoxin-like 8.6 kDa protein in rubredoxin operon Clostridium pasteurianum

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_10140
Feature type CDS
Gene nrdH
Product Glutaredoxin
Location 118743 - 118961 (strand: 1)
Length 219 (nucleotides) / 72 (amino acids)
In genomic island -

Contig

Accession contig_11
Length 143616 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1612
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00462 Glutaredoxin

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0695 Posttranslational modification, protein turnover, chaperones (O) O Glutaredoxin

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06191 glutaredoxin-like protein NrdH - -

Protein Sequence

MTVTIYSKPDCVQCNATYQMLTRKNIPFSVIDITQDEQAYQHVRTLGYQQVPVVIAGQDHWAGFRPDKLAAL

Flanking regions ( +/- flanking 50bp)

AACCCACGATATCTGCTCATAACGGGCAGCGATAACCACGGGAAACCGCCATGACAGTGACTATCTACAGCAAACCCGATTGTGTGCAGTGCAATGCCACCTACCAGATGCTGACACGGAAAAATATTCCGTTCAGTGTCATTGATATCACTCAGGATGAGCAGGCGTATCAGCATGTCCGCACACTGGGATATCAGCAGGTGCCGGTGGTGATCGCCGGTCAGGATCACTGGGCCGGGTTCCGTCCCGACAAACTTGCCGCCCTCTGAACCGCACACGCCGGAGGCACCATGACCACGCAGGCACTGATTTATTTCTC