Homologs in group_1470

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_09980 EHELCC_09980 100.0 Morganella morganii S2 yidZ HTH-type transcriptional regulator YidZ
NLDBIP_10325 NLDBIP_10325 100.0 Morganella morganii S4 yidZ HTH-type transcriptional regulator YidZ
LHKJJB_11030 LHKJJB_11030 100.0 Morganella morganii S3 yidZ HTH-type transcriptional regulator YidZ
HKOGLL_14090 HKOGLL_14090 100.0 Morganella morganii S5 yidZ HTH-type transcriptional regulator YidZ
F4V73_RS10480 F4V73_RS10480 83.5 Morganella psychrotolerans yidZ HTH-type transcriptional regulator YidZ
PMI_RS06085 PMI_RS06085 51.1 Proteus mirabilis HI4320 yidZ HTH-type transcriptional regulator YidZ

Distribution of the homologs in the orthogroup group_1470

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1470

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5PKV5 1.35e-101 304 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKY0 5.26e-101 302 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TAV5 5.26e-101 302 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella heidelberg (strain SL476)
Q8Z2P0 3.95e-100 300 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhi
B4TN13 8.74e-100 299 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella schwarzengrund (strain CVM19633)
B4SYB4 8.74e-100 299 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella newport (strain SL254)
B5QUQ7 8.74e-100 299 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella enteritidis PT4 (strain P125109)
B5FN16 8.74e-100 299 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella dublin (strain CT_02021853)
B5EYX8 8.74e-100 299 47 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella agona (strain SL483)
A8ACM1 2.09e-99 298 47 0 312 3 yidZ HTH-type transcriptional regulator YidZ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q3YWK2 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella sonnei (strain Ss046)
Q31UW5 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 4 (strain Sb227)
B2TUR4 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I3U4 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain SE11)
B1IX27 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A6H3 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O9:H4 (strain HS)
B7L852 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain 55989 / EAEC)
A7ZTR6 8.7e-99 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O139:H28 (strain E24377A / ETEC)
B7NF28 1.02e-98 296 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P31463 1.9e-98 296 47 0 312 1 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12)
B1X9U0 1.9e-98 296 47 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / DH10B)
C4ZYY9 1.9e-98 296 47 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / MC4100 / BW2952)
Q8FBU9 3.74e-98 295 48 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B5YXB5 4.65e-98 295 47 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XB23 4.65e-98 295 47 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7
Q328Z9 3.26e-97 293 47 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella dysenteriae serotype 1 (strain Sd197)
P10183 1.38e-18 87 26 10 320 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
Q9EXL7 1.44e-15 79 25 9 316 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
P52698 1.29e-13 73 26 12 325 3 phcA HTH-type transcriptional regulator PhcA Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q9ZN79 2.99e-13 72 26 9 318 3 linR HTH-type transcriptional regulator LinR Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)
P55733 9.36e-13 71 23 7 310 3 syrM2 HTH-type transcriptional regulator SyrM 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P77746 6.93e-12 68 49 0 67 2 ybdO Uncharacterized HTH-type transcriptional regulator YbdO Escherichia coli (strain K12)
P55359 1.35e-11 67 22 10 322 3 nodD1 Nodulation protein D 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q08812 3.83e-11 66 25 11 304 3 syrM HTH-type transcriptional regulator SyrM Rhizobium etli
P30979 4.07e-11 66 29 5 192 3 ybeF Uncharacterized HTH-type transcriptional regulator YbeF Escherichia coli (strain K12)
P12232 4.99e-11 66 22 10 322 3 nodD1 Nodulation protein D 1 Bradyrhizobium japonicum
P18561 1.74e-10 64 23 7 318 3 syrM HTH-type transcriptional regulator SyrM Rhizobium meliloti (strain 1021)
P52679 2.29e-10 63 24 9 316 1 pcpR PCP degradation transcriptional activation protein Sphingobium chlorophenolicum
P55619 1.35e-08 58 24 10 322 1 syrM1 HTH-type transcriptional regulator SyrM 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P50331 1.4e-08 58 23 12 318 3 nodD1 Nodulation protein D 1 Neorhizobium galegae
P08719 1.91e-08 58 23 15 335 3 nodD2 Nodulation protein D 2 Rhizobium meliloti (strain 1021)
P04680 2.1e-08 58 21 10 319 3 nodD Nodulation protein D Rhizobium leguminosarum bv. trifolii
P04681 2.38e-08 58 24 12 318 3 nodD Nodulation protein D Rhizobium leguminosarum bv. viciae
P23718 3.57e-08 57 24 11 320 3 nodD1 Nodulation protein D 1 Rhizobium leguminosarum bv. phaseoli
P10151 3.91e-08 57 21 14 319 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
P50327 4.1e-08 57 22 7 242 3 nodD1 Nodulation protein D 1 Bradyrhizobium sp. (strain NC92)
P23190 7.95e-08 56 23 13 317 3 nodD3 Nodulation protein D 3 Rhizobium meliloti (strain 1021)
P50323 7.99e-08 56 27 6 186 3 nodD1 Nodulation protein D 1 Bradyrhizobium elkanii
Q45264 1.07e-07 56 23 6 239 3 nodD1 Nodulation protein D 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P50324 1.9e-07 55 24 12 320 3 nodD2 Nodulation protein D 2 Bradyrhizobium elkanii
P03031 2.33e-07 55 24 13 323 3 nodD1 Nodulation protein D 1 Rhizobium meliloti (strain 1021)
P12233 7.62e-07 53 22 10 324 3 nodD2 Nodulation protein D 2 Bradyrhizobium japonicum
Q57748 1.42e-06 52 24 8 222 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P55700 1.68e-06 52 22 10 325 1 nodD2 Nodulation protein D 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q02876 1.85e-06 52 23 7 276 3 nodD1 Nodulation protein D 1 Rhizobium tropici
P46924 2.27e-06 52 31 0 80 3 leuO Probable HTH-type transcriptional regulator LeuO Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P04682 2.77e-06 52 30 3 120 3 nodD Nodulation protein D Bradyrhizobium sp. (strain ANU 289)
P16556 5.33e-06 50 29 3 147 3 nodD Nodulation protein D Rhizobium leguminosarum
Q45263 4.43e-05 48 23 11 317 3 nodD2 Nodulation protein D 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P23719 0.000114 47 21 6 278 3 nodD2 Nodulation protein D 2 Rhizobium leguminosarum bv. phaseoli
P23720 0.000256 45 38 0 59 3 nodD3 Nodulation protein D 3 Rhizobium leguminosarum bv. phaseoli
P77333 0.00058 44 28 11 222 1 pgrR HTH-type transcriptional regulator PgrR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_09430
Feature type CDS
Gene yidZ
Product HTH-type transcriptional regulator YidZ
Location 116143 - 117108 (strand: -1)
Length 966 (nucleotides) / 321 (amino acids)

Contig

Accession contig_10
Length 146103 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1470
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MNKSLHRLDLNLLIILQYLLEERSVSLVAARLAVTPSAVSKALTKLRTWFDDPLFIRSPQGLIPTPLMLRLEGVLPEFLHTAKSVAEIRDSDNPKGVQFRLLMEEPLNLIMLHDLAVTILNHYPESAVSIRDWDYNSLSEVIAGEADIGLLGRESYPKSRESISAIPDIVNFDLLFTDRPLAFIRRGHPLLSEAWTISNLIKYPHISTEYANRIPWALDDLLHDLGYSRQIRLSYSSFEQSLQMAAHPGHELITCAPGYCRHYVTKFQLDLECRPLPFEESFYRQLDIPFLMLWHKRNAHNQKTRWLREQIRQSVTAFTGE

Flanking regions ( +/- flanking 50bp)

GATATTACTGAGACGATATCCTGTCAGCAGCGGAAACCGCCGGGCGCTTTATGAATAAATCACTGCACCGCCTCGATTTAAATCTGCTTATCATCCTCCAGTATCTGCTGGAAGAGCGGAGCGTGAGCCTGGTTGCGGCCCGGCTGGCAGTGACCCCTTCGGCGGTCAGTAAAGCGCTGACCAAACTGCGTACCTGGTTTGATGATCCGCTGTTTATCCGCAGTCCGCAGGGGTTAATACCGACACCGCTGATGCTGCGTCTCGAAGGCGTGCTGCCGGAATTTCTGCATACTGCCAAATCAGTGGCGGAGATCCGCGACAGCGATAACCCGAAAGGGGTTCAGTTCCGTCTGCTGATGGAAGAACCGCTGAACCTGATCATGCTGCATGATCTGGCGGTCACGATCCTGAATCACTATCCGGAGTCGGCGGTCAGTATCCGTGACTGGGATTATAACTCACTCAGTGAGGTGATTGCGGGAGAGGCGGATATCGGGCTGCTCGGGCGTGAAAGCTACCCGAAGTCGCGGGAGAGCATCAGCGCGATCCCGGATATTGTCAATTTTGATCTGCTGTTCACAGACAGGCCGCTGGCGTTTATCCGGCGCGGACATCCGCTGCTCAGTGAGGCGTGGACAATCAGTAATCTGATCAAATACCCGCATATCAGTACGGAATATGCTAACCGGATCCCGTGGGCGCTGGATGATTTGCTGCATGATCTCGGTTATTCGCGGCAGATCCGGCTCTCTTATTCTTCTTTTGAACAATCATTGCAGATGGCCGCGCATCCGGGACATGAACTGATCACCTGTGCACCGGGCTACTGCCGCCACTATGTGACGAAATTTCAGCTGGATCTGGAGTGCCGCCCGCTGCCGTTTGAGGAATCATTTTACCGGCAGCTGGATATTCCGTTTCTGATGCTCTGGCATAAACGCAACGCGCATAATCAGAAAACCCGCTGGCTGCGGGAACAAATCCGGCAGAGTGTAACGGCGTTTACCGGGGAATAAAAAAAGGCATCCGCCCCCGGATGCCTTTGGGTACAACAACTGAACAGCGG