Homologs in group_1470

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09430 FBDBKF_09430 51.1 Morganella morganii S1 yidZ HTH-type transcriptional regulator YidZ
EHELCC_09980 EHELCC_09980 51.1 Morganella morganii S2 yidZ HTH-type transcriptional regulator YidZ
NLDBIP_10325 NLDBIP_10325 51.1 Morganella morganii S4 yidZ HTH-type transcriptional regulator YidZ
LHKJJB_11030 LHKJJB_11030 51.1 Morganella morganii S3 yidZ HTH-type transcriptional regulator YidZ
HKOGLL_14090 HKOGLL_14090 51.1 Morganella morganii S5 yidZ HTH-type transcriptional regulator YidZ
F4V73_RS10480 F4V73_RS10480 51.7 Morganella psychrotolerans yidZ HTH-type transcriptional regulator YidZ

Distribution of the homologs in the orthogroup group_1470

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1470

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4TN13 1.73e-110 327 51 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella schwarzengrund (strain CVM19633)
B4SYB4 1.73e-110 327 51 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella newport (strain SL254)
B5QUQ7 1.73e-110 327 51 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella enteritidis PT4 (strain P125109)
B5FN16 1.73e-110 327 51 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella dublin (strain CT_02021853)
B5EYX8 1.73e-110 327 51 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella agona (strain SL483)
Q5PKV5 4.2e-110 325 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5YXB5 4.63e-110 325 51 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XB23 4.63e-110 325 51 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7
Q8ZKY0 1.05e-109 324 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TAV5 1.05e-109 324 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella heidelberg (strain SL476)
Q328Z9 7.07e-109 322 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Shigella dysenteriae serotype 1 (strain Sd197)
Q8Z2P0 1.14e-108 322 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhi
P31463 2.22e-108 321 50 0 293 1 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12)
B1X9U0 2.22e-108 321 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / DH10B)
C4ZYY9 2.22e-108 321 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / MC4100 / BW2952)
Q3YWK2 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Shigella sonnei (strain Ss046)
Q31UW5 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 4 (strain Sb227)
B2TUR4 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I3U4 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain SE11)
B1IX27 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A6H3 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O9:H4 (strain HS)
B7L852 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain 55989 / EAEC)
A7ZTR6 9.67e-108 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O139:H28 (strain E24377A / ETEC)
B7NF28 1.14e-107 319 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A8ACM1 2.72e-107 318 49 0 293 3 yidZ HTH-type transcriptional regulator YidZ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q8FBU9 8.65e-107 317 50 0 293 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P55733 4.84e-17 84 25 10 326 3 syrM2 HTH-type transcriptional regulator SyrM 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9EXL7 5.17e-17 83 26 9 312 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
P52679 6.05e-16 80 24 7 309 1 pcpR PCP degradation transcriptional activation protein Sphingobium chlorophenolicum
Q9ZN79 9.32e-16 79 24 10 316 3 linR HTH-type transcriptional regulator LinR Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)
P30979 1.35e-15 79 25 5 232 3 ybeF Uncharacterized HTH-type transcriptional regulator YbeF Escherichia coli (strain K12)
P10183 1.09e-14 76 23 8 311 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
P52698 1.51e-14 76 23 11 331 3 phcA HTH-type transcriptional regulator PhcA Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P77746 6.55e-14 74 41 3 109 2 ybdO Uncharacterized HTH-type transcriptional regulator YbdO Escherichia coli (strain K12)
P18561 3.4e-13 72 25 9 320 3 syrM HTH-type transcriptional regulator SyrM Rhizobium meliloti (strain 1021)
P55700 5.42e-13 72 23 8 311 1 nodD2 Nodulation protein D 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q08812 9.46e-13 71 24 13 307 3 syrM HTH-type transcriptional regulator SyrM Rhizobium etli
P04680 1.17e-12 70 24 9 307 3 nodD Nodulation protein D Rhizobium leguminosarum bv. trifolii
P12233 1.8e-12 70 23 8 311 3 nodD2 Nodulation protein D 2 Bradyrhizobium japonicum
P10151 2.05e-11 67 24 11 327 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
P46924 7.26e-11 65 31 1 113 3 leuO Probable HTH-type transcriptional regulator LeuO Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P50331 2.18e-10 64 22 10 327 3 nodD1 Nodulation protein D 1 Neorhizobium galegae
P55359 2.58e-10 63 20 5 308 3 nodD1 Nodulation protein D 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P12232 9.64e-10 62 20 5 308 3 nodD1 Nodulation protein D 1 Bradyrhizobium japonicum
P03031 1.09e-09 62 22 7 308 3 nodD1 Nodulation protein D 1 Rhizobium meliloti (strain 1021)
P23718 9.06e-09 59 21 9 316 3 nodD1 Nodulation protein D 1 Rhizobium leguminosarum bv. phaseoli
P55619 1.21e-08 59 23 11 322 1 syrM1 HTH-type transcriptional regulator SyrM 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P50327 4.86e-08 57 21 9 308 3 nodD1 Nodulation protein D 1 Bradyrhizobium sp. (strain NC92)
P08719 5.67e-08 57 41 0 70 3 nodD2 Nodulation protein D 2 Rhizobium meliloti (strain 1021)
Q45264 6.16e-08 57 21 10 321 3 nodD1 Nodulation protein D 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q02876 8.1e-08 56 20 10 313 3 nodD1 Nodulation protein D 1 Rhizobium tropici
P50323 8.41e-08 56 23 11 322 3 nodD1 Nodulation protein D 1 Bradyrhizobium elkanii
P50324 2.27e-07 55 32 4 137 3 nodD2 Nodulation protein D 2 Bradyrhizobium elkanii
P23190 3.03e-07 54 28 2 146 3 nodD3 Nodulation protein D 3 Rhizobium meliloti (strain 1021)
P04681 4.84e-07 53 38 0 70 3 nodD Nodulation protein D Rhizobium leguminosarum bv. viciae
P04682 5.03e-07 54 22 10 321 3 nodD Nodulation protein D Bradyrhizobium sp. (strain ANU 289)
P23720 9.19e-06 50 42 0 59 3 nodD3 Nodulation protein D 3 Rhizobium leguminosarum bv. phaseoli
Q45263 2.69e-05 48 22 11 310 3 nodD2 Nodulation protein D 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P77171 3.01e-05 48 28 7 201 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P16556 5.9e-05 47 42 0 61 3 nodD Nodulation protein D Rhizobium leguminosarum
Q52838 6.19e-05 47 20 10 314 3 nodD1 Nodulation protein D 1 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
O34827 0.000122 46 24 7 213 3 ykuM Uncharacterized HTH-type transcriptional regulator YkuM Bacillus subtilis (strain 168)
P23719 0.000137 46 35 0 70 3 nodD2 Nodulation protein D 2 Rhizobium leguminosarum bv. phaseoli
P32008 0.000167 46 19 6 298 3 nodD2 Nodulation protein D 2 Rhizobium tropici
P14145 0.000313 45 31 1 88 3 ampR HTH-type transcriptional activator AmpR Rhodobacter capsulatus
Q57748 0.000748 44 24 7 218 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06085
Feature type CDS
Gene yidZ
Product HTH-type transcriptional regulator YidZ
Location 1334399 - 1335370 (strand: -1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1470
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MSNKPLHRIDLNLLVIFQILLQERSVTLAAKWLSISPSAVSKALAKLRIWFDDPLFIRSPQGLIPTPLSLSIEDSLSDFINISHHIANKRNTEVPVGLKFNLVLETPLHQVMLPSLPQQILSHYPKSTLQIKNWEYNSLSNIIDGEVDIGLVGREYYSRSKELLELLPDVIDYEILFDDIPLVYLHKNHPLMKMKWDLNNFLSFSQVSTEYDKQSHWALDNILKEMNKSRQIAITYTSFEQSLFMISQPDHQLITCAPGYCRYYVKTHFPDIVTLPIPLPPVFLDQLHLPFVLLWHKRNSHNTKIIWLRNTIRKSINQQTSDI

Flanking regions ( +/- flanking 50bp)

TCTTTTTCTATGCTTTCCTCGGTTCACAGAACAAAAAAAGGTTAAATATAATGTCTAACAAACCATTACATAGAATTGATTTGAATTTGTTAGTCATATTTCAAATTCTTTTACAGGAGCGCAGTGTCACCTTGGCCGCTAAGTGGTTATCCATTTCTCCTTCTGCTGTGAGTAAAGCATTAGCCAAATTAAGGATATGGTTTGATGATCCTCTTTTTATCCGTAGTCCACAAGGGTTGATCCCAACACCATTATCGTTAAGTATTGAAGATTCTTTATCTGATTTTATTAATATTAGCCACCATATAGCCAATAAACGTAATACAGAAGTTCCTGTTGGACTTAAATTTAATTTAGTTTTAGAAACACCGTTACATCAGGTCATGTTACCTTCTTTACCACAACAAATATTATCTCATTACCCAAAATCCACACTTCAGATAAAAAATTGGGAATATAATTCCCTTTCTAATATTATTGATGGAGAAGTTGATATTGGGCTTGTTGGACGAGAATACTATTCACGCTCAAAAGAGTTACTAGAGCTACTTCCTGATGTGATTGATTATGAAATATTATTTGATGATATCCCACTCGTTTATCTACACAAAAATCATCCGTTAATGAAAATGAAGTGGGATCTTAATAATTTTTTATCGTTTTCTCAGGTGAGTACAGAATATGACAAACAAAGTCATTGGGCTTTGGATAATATCTTAAAAGAAATGAACAAAAGTCGTCAGATAGCAATTACTTATACTTCTTTTGAGCAATCTCTTTTTATGATATCTCAACCTGACCATCAATTAATTACTTGTGCACCAGGATATTGTCGTTATTATGTGAAAACACATTTTCCTGATATTGTAACATTACCTATCCCTCTCCCCCCTGTGTTTTTAGACCAGCTTCATCTACCTTTTGTTTTATTATGGCATAAGCGTAATAGCCATAATACAAAAATTATATGGCTAAGAAATACAATAAGAAAAAGTATTAACCAACAAACCTCCGATATCTGATAGTTTAAAATAAAAAAGGTGATTTGATATCAAATCACCTTTTATAAACT