Homologs in group_1004

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_11980 EHELCC_11980 100.0 Morganella morganii S2 pspA phage shock protein PspA
NLDBIP_12320 NLDBIP_12320 100.0 Morganella morganii S4 pspA phage shock protein PspA
LHKJJB_12180 LHKJJB_12180 100.0 Morganella morganii S3 pspA phage shock protein PspA
HKOGLL_10795 HKOGLL_10795 100.0 Morganella morganii S5 pspA phage shock protein PspA
F4V73_RS03695 F4V73_RS03695 94.6 Morganella psychrotolerans pspA phage shock protein PspA
PMI_RS06645 PMI_RS06645 78.4 Proteus mirabilis HI4320 pspA phage shock protein PspA

Distribution of the homologs in the orthogroup group_1004

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1004

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFM8 1.78e-100 293 64 0 220 3 pspA Phage shock protein A Shigella flexneri
P0AFM6 1.78e-100 293 64 0 220 1 pspA Phage shock protein A Escherichia coli (strain K12)
P0AFM7 1.78e-100 293 64 0 220 3 pspA Phage shock protein A Escherichia coli O157:H7
B2J6D9 1.04e-27 108 30 2 220 1 vipp1 Membrane-associated protein Vipp1 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Q03943 6.88e-24 100 30 0 200 2 VIPP1 Membrane-associated protein VIPP1, chloroplastic Pisum sativum
Q55707 1.9e-22 95 29 2 223 1 vipp1 Membrane-associated protein Vipp1 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8S0J7 1.91e-21 93 29 0 199 1 VIPP1 Membrane-associated protein VIPP1, chloroplastic Oryza sativa subsp. japonica
O80796 2.51e-21 93 28 0 182 1 VIPP1 Membrane-associated protein VIPP1, chloroplastic Arabidopsis thaliana
Q9RUB7 8.63e-19 84 26 3 222 1 DR_1473 Phage shock protein A homolog Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
O32201 1.49e-10 62 25 0 177 2 liaH Protein LiaH Bacillus subtilis (strain 168)
P54617 2.06e-10 62 26 2 222 1 ydjF Phage shock protein A homolog Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_05610
Feature type CDS
Gene pspA
Product phage shock protein PspA
Location 129069 - 129743 (strand: -1)
Length 675 (nucleotides) / 224 (amino acids)

Contig

Accession contig_5
Length 181448 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1004
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04012 PspA/IM30 family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1842 Transcription (K)
Signal transduction mechanisms (T)		 KT Phage shock protein A

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03969 phage shock protein A - -

Protein Sequence

MGIFSRFADIINANVASLLDKAEDPQKMIRLMIQEMEDMLVEIRSTSARTLAERKNLSRQIESGERQVSDWQEKAELAIVKGKEDLARAALLEKQRVEGHVDTLRHELIILDETIARLKNEINELEQKLTETRARQQSMVVRHEAAKSSRAVRRQLDSGRMDEAMARFEQFEARIDHMEGEAASYGLGKEKSLEQQFAELKAEDEISAQIAAIKARLEKEEKGE

Flanking regions ( +/- flanking 50bp)

TAATAGCAAACGTGTCATAAGACATAACTGCTGATAAAAGGACATCAATCATGGGAATCTTTTCACGTTTTGCCGATATCATTAACGCCAACGTTGCATCACTGCTGGATAAAGCGGAAGATCCGCAGAAAATGATCCGCCTGATGATTCAGGAAATGGAAGATATGCTGGTGGAAATCCGCTCCACCTCTGCCCGCACCCTCGCGGAACGCAAAAATCTGTCACGTCAGATTGAAAGCGGTGAGCGTCAGGTGAGTGACTGGCAGGAAAAAGCGGAACTGGCGATTGTCAAAGGAAAAGAAGATCTGGCCCGCGCCGCACTGCTGGAAAAACAGCGCGTGGAAGGCCATGTCGATACACTGCGTCATGAGCTGATTATTCTGGACGAAACTATCGCCCGGCTGAAAAATGAAATTAACGAACTGGAACAGAAACTGACTGAAACCCGTGCCCGCCAGCAATCCATGGTGGTGCGTCACGAAGCGGCAAAATCATCCCGTGCGGTGCGCCGTCAGCTCGACAGCGGCCGGATGGATGAGGCAATGGCCCGTTTCGAGCAGTTTGAGGCGCGGATTGACCATATGGAAGGTGAAGCCGCAAGCTATGGTCTGGGGAAAGAAAAATCACTGGAACAGCAGTTTGCCGAGCTGAAAGCGGAAGATGAGATCAGCGCGCAAATCGCGGCCATCAAAGCACGTCTTGAAAAAGAAGAAAAGGGCGAATAAGGTCGGTAACAGGCTTTCCTGAATTAATACCATTAAGGACAAAAATATGG