Homologs in group_266

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_12440 EHELCC_12440 100.0 Morganella morganii S2 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
NLDBIP_12780 NLDBIP_12780 100.0 Morganella morganii S4 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
LHKJJB_12640 LHKJJB_12640 100.0 Morganella morganii S3 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
HKOGLL_11255 HKOGLL_11255 100.0 Morganella morganii S5 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
F4V73_RS05605 F4V73_RS05605 88.1 Morganella psychrotolerans - PHP domain-containing protein
PMI_RS06475 PMI_RS06475 64.7 Proteus mirabilis HI4320 - PHP domain-containing protein
PMI_RS10965 PMI_RS10965 28.5 Proteus mirabilis HI4320 - PHP domain-containing protein

Distribution of the homologs in the orthogroup group_266

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_266

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O54453 8.08e-128 368 67 0 273 3 rnm 5'-3' exoribonuclease Rnm Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77766 9.15e-125 360 65 0 273 1 rnm 5'-3' exoribonuclease Rnm Escherichia coli (strain K12)
P44176 2.84e-88 267 49 2 273 3 HI_1400 5'-3' exoribonuclease Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7NXD4 2.13e-53 178 40 3 277 1 CV_1693 3',5'-nucleoside bisphosphate phosphatase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
C8WJZ5 5.56e-24 100 33 7 254 1 phnPP Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase Eggerthella lenta (strain ATCC 25559 / DSM 2243 / CCUG 17323 / JCM 9979 / KCTC 3265 / NCTC 11813 / VPI 0255 / 1899 B)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_05150
Feature type CDS
Gene yciV
Product 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
Location 37185 - 38054 (strand: -1)
Length 870 (nucleotides) / 289 (amino acids)

Contig

Accession contig_5
Length 181448 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_266
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02811 PHP domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0613 Nucleotide transport and metabolism (F) F 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07053 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] - -

Protein Sequence

MEPENTGIDLSCYDLHSHTTASDGMLTPEQLLDRAVEMKVTVLAITDHDTTDALPAAHHYQQANNLPLTVINGVEISTLWEHHEIHIVGLNIDITHPAMTELLAQQSERRRARGMLISERLAKAGIEGTWDEANELAQGGEVTRGHFARVLIARGVEPTIPKVFKRYLARNKTGYVPPQWCDIPDAVQAIHAAGGQAVLAHPGRYGLSAKWLKRLCDFFKQAGGDGMEVAQCQQAPDERRTLAQYAITYGLKASQGSDFHQPCSWIELGRKLWLPGDVIPIWQDWSLKD

Flanking regions ( +/- flanking 50bp)

TTTATGAAGTCACTTCTGGCAATGCATTGTCAGAACAGAAGGGAGACGCGATGGAGCCGGAAAATACAGGTATTGACCTGTCGTGCTATGATTTACACAGCCATACCACTGCGTCAGACGGCATGCTGACACCGGAGCAGTTACTGGACAGAGCCGTTGAGATGAAGGTGACCGTGCTGGCAATTACCGATCACGACACCACGGATGCACTTCCGGCGGCACATCATTATCAGCAGGCAAATAATTTGCCGCTGACGGTGATTAATGGTGTTGAAATATCAACGCTTTGGGAACATCATGAGATTCATATTGTCGGGCTGAATATTGATATTACCCATCCGGCAATGACAGAATTACTGGCGCAGCAGTCAGAACGGCGCCGGGCACGCGGGATGCTTATCAGTGAACGGCTGGCAAAGGCCGGAATTGAAGGCACCTGGGATGAGGCGAATGAGCTGGCGCAGGGCGGTGAAGTCACGCGCGGACACTTCGCCCGGGTGTTGATCGCCCGTGGTGTGGAACCGACGATTCCGAAAGTGTTCAAACGTTATCTCGCCCGTAACAAAACCGGTTATGTGCCGCCGCAATGGTGTGATATCCCTGACGCCGTGCAGGCCATTCATGCCGCCGGCGGACAGGCCGTGCTGGCACATCCCGGCCGCTATGGCTTATCCGCCAAGTGGCTTAAACGCCTGTGTGATTTCTTTAAACAGGCCGGCGGGGATGGCATGGAAGTGGCGCAATGTCAGCAGGCTCCGGATGAGCGCCGGACTCTGGCACAATACGCAATAACATACGGATTAAAAGCCTCCCAGGGATCCGATTTTCATCAGCCGTGTTCGTGGATAGAACTGGGCCGTAAATTGTGGTTACCGGGTGATGTAATACCAATCTGGCAGGATTGGTCACTGAAGGATTAACAGAGGAAACAACATGGGCCAGATGTTTTATATCCATCCGGATAACCCGC