Orthogroup:group_1013


Homologs in group_1013

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05660 FBDBKF_05660 Morganella morganii S1 pdxY pyridoxal kinase PdxY
EHELCC_11930 EHELCC_11930 Morganella morganii S2 pdxY pyridoxal kinase PdxY
NLDBIP_12270 NLDBIP_12270 Morganella morganii S4 pdxY pyridoxal kinase PdxY
LHKJJB_12130 LHKJJB_12130 Morganella morganii S3 pdxY pyridoxal kinase PdxY
HKOGLL_10745 HKOGLL_10745 Morganella morganii S5 pdxY pyridoxal kinase PdxY
F4V73_RS03645 F4V73_RS03645 Morganella psychrotolerans pdxY pyridoxal kinase PdxY
PMI_RS06690 PMI_RS06690 Proteus mirabilis HI4320 pdxY pyridoxal kinase PdxY

Distribution of group_1013 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1013 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1013

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1013.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pdxY 7

Product

# Product Occurence
1 pyridoxal kinase PdxY 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2240 7 H Coenzyme transport and metabolism (H) Pyridoxal/pyridoxine/pyridoxamine kinase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00868 7 pyridoxine kinase [EC:2.7.1.35] Vitamin B6 metabolism
Metabolic pathways
Biosynthesis of cofactors		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF08543 7 Phosphomethylpyrimidine kinase

Annotations of the 123 SwissProt hits

Annotation Number of occurrences
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 3
Probable thiamine biosynthetic bifunctional enzyme, chloroplastic 1
Putative pyridoxal kinase 1
Putative pyridoxal kinase BUD16 1
Putative pyridoxal kinase BUD17 1
Putative pyridoxal kinase C18.10 1
Putative pyridoxal kinase C6F6.11c 1
Putative pyridoxal kinase PdxY 1
Putative pyridoxine kinase 2
Pyridoxal kinase 9
Pyridoxal kinase PdxY 63
Pyridoxine kinase 1
Pyridoxine/pyridoxal/pyridoxamine kinase 35
Thiamine biosynthesis multifunctional protein ThiED 1
Thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic 1
Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic 1

Protein length

Min length 288
Max length 289
Mean length (sd) 288.1 (0.4)
Median length 288.0

Protein length distribution