Homologs in group_898

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6 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_05995 EHELCC_05995 100.0 Morganella morganii S2 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
NLDBIP_06315 NLDBIP_06315 100.0 Morganella morganii S4 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
LHKJJB_03195 LHKJJB_03195 100.0 Morganella morganii S3 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
HKOGLL_06670 HKOGLL_06670 100.0 Morganella morganii S5 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
F4V73_RS09125 F4V73_RS09125 43.0 Morganella psychrotolerans - ABC transporter permease
F4V73_RS09180 F4V73_RS09180 96.5 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_898

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_898

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36948 1.73e-94 286 49 5 324 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P44736 1.08e-82 256 49 3 290 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AGI1 2.19e-81 253 49 5 292 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 2.19e-81 253 49 5 292 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 2.19e-81 253 49 5 292 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P32720 2.19e-58 194 38 3 316 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
P77315 6.63e-55 185 39 4 292 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
P44885 1.59e-54 184 36 4 301 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45045 5.54e-50 174 37 5 356 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q1JUP6 8.37e-49 170 33 5 352 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
Q9F9B1 1.74e-46 164 34 5 360 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
P0AGI7 3.48e-45 162 35 6 356 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 3.48e-45 162 35 6 356 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 3.48e-45 162 35 6 356 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 3.48e-45 162 35 6 356 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P55569 6e-45 159 33 6 333 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P0AE27 1.01e-44 159 30 4 344 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 1.01e-44 159 30 4 344 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
Q56036 3.36e-41 150 39 6 297 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P23200 8.39e-41 149 39 6 297 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
P39328 9.54e-39 143 38 2 261 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
Q2PBL9 8.72e-37 138 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q7N2D8 3.61e-36 136 30 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q8G845 4.64e-36 136 35 5 276 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
P37772 5.68e-35 133 35 4 280 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q57321 2.16e-34 135 30 11 349 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
Q2PBM2 2.75e-34 131 29 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
A4TQL6 3.18e-34 132 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 3.18e-34 132 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 3.18e-34 132 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 3.18e-34 132 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 3.18e-34 132 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJ53 4.09e-34 131 31 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8G846 7.36e-34 130 34 8 348 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
A7FMJ8 1.35e-33 130 31 5 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JLQ1 3.67e-33 129 30 6 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 5.22e-33 128 30 6 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 5.22e-33 128 30 6 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A1JJ54 5.8e-33 128 32 6 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A7FMJ9 1.75e-32 126 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JLQ2 2.73e-32 126 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 2.73e-32 126 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
Q2PBM1 2.81e-32 126 30 5 282 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
B2K3F9 2.93e-32 126 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A4TQL7 8.31e-32 125 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 8.31e-32 125 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 8.31e-32 125 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 8.31e-32 125 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 8.31e-32 125 28 3 269 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
Q5PJE5 7.67e-30 119 28 2 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ2 8.58e-30 119 28 2 280 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 8.58e-30 119 28 2 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 8.58e-30 119 28 2 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
Q8Z2X7 3.67e-29 117 28 2 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q7N2D7 1.44e-28 116 28 8 338 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBL8 4.52e-28 115 30 7 292 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
Q4J711 3.16e-27 113 30 8 290 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P0AFS2 9.44e-27 111 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 9.44e-27 111 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 9.44e-27 111 28 4 283 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 9.44e-27 111 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 9.44e-27 111 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 9.44e-27 111 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
A4WER2 1.02e-26 111 27 5 290 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
B1LFA0 1.07e-26 111 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
Q8X504 1.67e-26 110 28 4 283 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
A4WER3 1.04e-23 103 32 4 246 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
Q0T4L8 4.18e-23 101 27 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
P77672 6.22e-23 100 27 4 290 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 6.22e-23 100 27 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8XAY8 7.01e-23 100 27 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q83RD8 8.22e-23 100 27 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
A6TEB6 8.62e-23 100 26 3 282 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q57HE2 2.92e-22 99 29 2 289 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
B1IRU6 7.37e-22 97 26 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 7.37e-22 97 26 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
Q8Z2X6 1.21e-21 97 28 2 289 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
A9MZG2 1.42e-21 97 28 2 289 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ3 1.44e-21 97 28 2 289 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 1.44e-21 97 28 2 289 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B1LFA1 1.52e-21 97 26 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
A6TEB7 5.78e-18 87 30 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
O05254 0.000103 47 27 5 202 1 nupP Guanosine ABC transporter permease protein NupP Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_04705
Feature type CDS
Gene araH
Product Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
Location 143779 - 144819 (strand: 1)
Length 1041 (nucleotides) / 346 (amino acids)

Contig

Accession contig_4
Length 199551 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_898
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K17206 putative xylitol transport system permease protein ABC transporters -

Protein Sequence

MTTTNTAPAPGVSFIARNKKNMHKYGIILAFFVLCLIVAVVGEVQVARGEWTNNYFLSQDNMLIILRQISINGILAIGMTFVIITAGVDLSVGSVLALSGIVAARFATSNTGLAIGDTANAVMIPMIIALGIGIICGLLNGTILAKFNLQPFIVTMGMLSAARGLTLLTTDGNPVSQLNSDFRWLGNGYILDIPVPVVILAVIFILAWILLNKTTFGRYVYAVGGNPKSARTSGISVIKIKVLVYTLCGALAGIAGLILTARTGSAQTSAGSAYELDAIAAVVIGGTSMAGGVGTLVGTLFGVLIIGVMNNGLDLLGVQSYYQQIIKGALIVIAVLLDPSRKQRRD

Flanking regions ( +/- flanking 50bp)

TGCGGTGTGATCTCACCCGCCAACGTATGCATGAATAAAGAGAAGTGACCATGACTACAACAAATACTGCACCCGCACCAGGGGTCTCATTTATCGCCCGTAACAAGAAAAACATGCACAAATACGGCATTATTCTGGCGTTCTTTGTGCTGTGTCTGATTGTGGCGGTTGTCGGTGAAGTTCAGGTCGCCCGCGGCGAATGGACCAATAACTACTTTCTGAGTCAGGACAACATGCTGATTATCCTGCGTCAGATTTCCATCAACGGTATTCTCGCCATCGGGATGACCTTCGTCATTATCACCGCCGGTGTTGACCTCTCTGTCGGTTCGGTGCTGGCACTGAGCGGGATTGTGGCGGCGCGGTTTGCCACCAGCAATACCGGTCTGGCTATCGGTGATACCGCGAATGCCGTGATGATCCCGATGATTATCGCACTCGGCATCGGTATCATTTGTGGTCTGCTTAACGGGACCATTCTGGCGAAATTCAACCTTCAGCCGTTTATCGTCACCATGGGGATGCTGTCTGCGGCACGCGGTCTGACTCTGCTGACCACTGACGGTAACCCGGTTTCCCAGCTCAACAGCGATTTCCGCTGGCTGGGTAACGGCTATATCCTGGATATCCCGGTACCGGTGGTGATCCTGGCGGTTATCTTTATTCTGGCCTGGATTTTACTCAATAAAACCACCTTCGGCCGTTATGTGTATGCCGTCGGCGGCAACCCGAAAAGCGCCAGAACCTCCGGTATCAGCGTGATTAAAATTAAAGTGCTGGTTTATACCCTGTGTGGCGCGTTAGCCGGTATTGCCGGGCTGATTCTGACTGCCCGTACCGGGTCAGCACAGACCAGTGCAGGCAGCGCCTACGAGCTGGATGCGATTGCGGCGGTGGTTATCGGCGGCACCAGTATGGCCGGTGGTGTGGGGACGTTAGTCGGCACCCTGTTCGGCGTGTTAATTATCGGTGTGATGAATAACGGTCTCGACCTGCTGGGCGTGCAGTCGTACTACCAGCAGATTATCAAAGGCGCATTAATTGTTATCGCCGTACTTTTGGATCCGTCACGTAAGCAACGCCGTGACTGATGGCAGTACCGCGCGGATTCTTTCAGCCTGCCACTGGCTGAAGGATGAAG