Homologs in group_816

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_05380 EHELCC_05380 100.0 Morganella morganii S2 recJ single-stranded-DNA-specific exonuclease RecJ
NLDBIP_05700 NLDBIP_05700 100.0 Morganella morganii S4 recJ single-stranded-DNA-specific exonuclease RecJ
LHKJJB_02580 LHKJJB_02580 100.0 Morganella morganii S3 recJ single-stranded-DNA-specific exonuclease RecJ
HKOGLL_06055 HKOGLL_06055 100.0 Morganella morganii S5 recJ single-stranded-DNA-specific exonuclease RecJ
F4V73_RS08530 F4V73_RS08530 87.9 Morganella psychrotolerans recJ single-stranded-DNA-specific exonuclease RecJ
PMI_RS09910 PMI_RS09910 67.9 Proteus mirabilis HI4320 recJ single-stranded-DNA-specific exonuclease RecJ

Distribution of the homologs in the orthogroup group_816

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_816

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39693 0.0 808 70 1 575 3 recJ Single-stranded-DNA-specific exonuclease RecJ Dickeya dadantii (strain 3937)
P21893 0.0 798 68 1 574 1 recJ Single-stranded-DNA-specific exonuclease RecJ Escherichia coli (strain K12)
P28355 0.0 789 68 1 574 3 recJ Single-stranded-DNA-specific exonuclease RecJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45112 0.0 681 60 2 554 3 recJ Single-stranded-DNA-specific exonuclease RecJ Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O32044 2.3e-79 268 32 12 559 3 recJ Single-stranded-DNA-specific exonuclease RecJ Bacillus subtilis (strain 168)
Q5SJ47 6.43e-55 200 33 16 503 1 recJ Single-stranded-DNA-specific exonuclease RecJ Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
O64145 1.77e-14 80 21 23 573 3 yorK Putative single-strand DNA-specific exonuclease yorK Bacillus phage SPbeta
O31903 1.77e-14 80 21 23 573 1 yorK Putative SPbeta prophage-derived single-strand DNA-specific exonuclease YorK Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_04090
Feature type CDS
Gene recJ
Product single-stranded-DNA-specific exonuclease RecJ
Location 3326 - 5059 (strand: -1)
Length 1734 (nucleotides) / 577 (amino acids)

Contig

Accession contig_4
Length 199551 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_816
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01368 DHH family
PF02272 DHHA1 domain
PF17768 RecJ OB domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0608 Replication, recombination and repair (L) L ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Base excision repair
Mismatch repair
Homologous recombination		 -

Protein Sequence

MIKTELRRRDAADYTALLSPDRPELLCRLYAARGITSAEQLERGARGLLNYGQLNGIDQAVVLLKEALHQNQRIVIVGDFDADGATSTALSVRALRRMGFRQVDFLVPNRFEDGYGLSAQVTEQARRKGAELIMTVDNGISSHDGVAAAHAAGIRVIVTDHHLPGEILPPAEAIINPNLADCGFLSKSLAGVGVTFYLMSALRASLRADDWFAQQNIAEPNLAELLDLVALGTVADVVPLDQNNRILVHQGLNRIRAGRCCAGITALLETSKRQAPALVASDLGFALGPRLNAAGRLDDMSVGVELLLTDDMAKARMLAHELDGLNQTRREIEQGMQQEALTLFSKIEHSTTEIPSGIALYHPEWHQGVVGILASRIKERYHRPVIAFAPCGDGLLKGSGRSVSGLHLRDVLERLDTLNPGMMAAFGGHAMAAGLSLPESYFPDFQHKFAALVDDMIDPGLLHGVIWSDGVLSPQDMTLETAGLLREGGPWGQGFPEPLFDGTFRLLQQRIVGEKHLKVMIEPEDGGPLLDGIAFNVDVNYWPDNSVQRVRLAYKLDVNEFRGQRSVQLLIEHIWPD

Flanking regions ( +/- flanking 50bp)

TAAAATTGCTGAATTAGTAAATAAATAATTAATAGTATAATCAGGTTGTTATGATAAAAACAGAACTCCGCCGCCGTGATGCGGCGGATTACACAGCACTGCTTTCTCCCGATCGCCCCGAACTGTTATGCCGTCTGTATGCTGCCAGAGGAATTACCTCTGCGGAGCAACTGGAGCGCGGTGCACGCGGGCTGCTTAATTACGGTCAGCTTAATGGCATTGACCAGGCCGTTGTACTGCTGAAAGAAGCACTGCACCAGAATCAGCGGATTGTGATTGTCGGCGATTTTGATGCTGACGGCGCAACCAGCACTGCACTGTCTGTCCGCGCACTGCGCCGGATGGGATTCCGGCAGGTGGATTTTCTTGTCCCCAACCGTTTTGAGGACGGCTACGGGCTCAGCGCACAGGTGACAGAGCAGGCCCGCCGCAAAGGGGCGGAGCTGATTATGACAGTGGATAACGGTATTTCCTCTCATGACGGCGTGGCCGCTGCTCATGCTGCCGGGATCCGCGTGATTGTGACTGACCACCATCTGCCGGGAGAGATTCTGCCGCCGGCGGAAGCGATTATTAACCCGAACCTGGCAGACTGCGGATTTCTCTCCAAATCCCTCGCCGGTGTCGGCGTAACCTTTTATCTGATGTCCGCGCTGCGGGCATCACTGCGGGCGGACGACTGGTTCGCACAACAGAATATTGCCGAGCCGAACCTGGCTGAACTGCTTGACCTGGTCGCACTGGGCACAGTGGCAGATGTGGTGCCGCTTGATCAGAACAACCGTATCCTTGTGCATCAGGGGCTGAACCGCATCCGTGCCGGACGCTGCTGTGCCGGGATCACCGCGCTGCTGGAGACCTCCAAACGGCAGGCTCCCGCACTGGTGGCGAGTGACCTGGGTTTTGCGCTCGGGCCGCGTCTGAATGCGGCGGGCAGACTGGATGATATGTCAGTCGGTGTTGAACTGCTGCTGACGGATGATATGGCGAAAGCACGCATGCTGGCACATGAACTGGATGGCCTGAACCAGACCCGGCGCGAAATAGAGCAGGGAATGCAGCAGGAGGCCCTGACACTGTTCAGCAAAATTGAGCACAGCACCACGGAAATACCGTCAGGGATAGCTCTGTATCACCCTGAATGGCATCAGGGCGTGGTCGGTATTCTCGCCTCGCGTATCAAAGAGCGTTATCACCGTCCGGTGATTGCCTTTGCTCCTTGCGGTGATGGTCTGCTGAAAGGCTCCGGGCGCTCGGTAAGCGGCCTGCATCTGCGGGATGTGCTCGAGCGGCTTGATACGCTCAATCCGGGAATGATGGCCGCATTCGGCGGCCATGCGATGGCGGCCGGGCTTTCTCTGCCGGAATCGTATTTCCCTGATTTTCAGCATAAATTTGCCGCGCTGGTGGATGATATGATTGACCCCGGCTTGCTGCACGGGGTTATCTGGAGCGACGGCGTGCTGTCACCGCAGGATATGACACTGGAAACCGCTGGTTTGCTGCGTGAAGGCGGGCCGTGGGGGCAGGGGTTCCCGGAGCCGTTGTTTGACGGTACATTCCGGCTGCTGCAACAGCGCATCGTCGGTGAAAAGCACCTGAAAGTGATGATTGAACCGGAAGACGGCGGTCCGCTGCTCGATGGTATCGCCTTTAATGTTGATGTGAATTACTGGCCGGACAACAGTGTGCAGCGGGTTCGTCTCGCGTATAAACTGGATGTGAATGAGTTCCGCGGACAGCGCAGTGTGCAGTTACTGATAGAACATATCTGGCCGGATTAATTTTAGTCCGAAAGGGGGTTGCAGTGCTGTCATGATGAGCGGATTTTCGC