Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in Morganella morganii S1 and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of Homologous recombination Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the Homologous recombination pathway
| KO | Description | #in this genome | All occurrences |
|---|---|---|---|
| K01159 | crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] | 1 | 7 |
| K02317 | DNA replication protein DnaT | 1 | 5 |
| K02327 | DNA polymerase delta subunit 1 [EC:2.7.7.7] | 0 | 0 |
| K02328 | DNA polymerase delta subunit 2 | 0 | 0 |
| K02335 | DNA polymerase I [EC:2.7.7.7] | 1 | 7 |
| K02337 | DNA polymerase III subunit alpha [EC:2.7.7.7] | 1 | 7 |
| K02338 | DNA polymerase III subunit beta [EC:2.7.7.7] | 1 | 7 |
| K02339 | DNA polymerase III subunit chi [EC:2.7.7.7] | 1 | 7 |
| K02340 | DNA polymerase III subunit delta [EC:2.7.7.7] | 1 | 7 |
| K02341 | DNA polymerase III subunit delta' [EC:2.7.7.7] | 1 | 7 |
| K02342 | DNA polymerase III subunit epsilon [EC:2.7.7.7] | 1 | 8 |
| K02343 | DNA polymerase III subunit gamma/tau [EC:2.7.7.7] | 1 | 7 |
| K02344 | DNA polymerase III subunit psi [EC:2.7.7.7] | 1 | 7 |
| K02345 | DNA polymerase III subunit theta [EC:2.7.7.7] | 2 | 13 |
| K02686 | primosomal replication protein N | 0 | 2 |
| K03111 | single-strand DNA-binding protein | 4 | 25 |
| K03165 | DNA topoisomerase III [EC:5.6.2.1] | 0 | 0 |
| K03504 | DNA polymerase delta subunit 3 | 0 | 0 |
| K03505 | DNA polymerase delta subunit 4 | 0 | 0 |
| K03550 | holliday junction DNA helicase RuvA | 1 | 7 |
| K03551 | holliday junction DNA helicase RuvB [EC:5.6.2.4] | 1 | 7 |
| K03553 | recombination protein RecA | 1 | 8 |
| K03581 | exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | 1 | 7 |
| K03582 | exodeoxyribonuclease V beta subunit [EC:3.1.11.5] | 1 | 7 |
| K03583 | exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] | 1 | 7 |
| K03584 | DNA repair protein RecO (recombination protein O) | 1 | 7 |
| K03629 | DNA replication and repair protein RecF | 1 | 7 |
| K03655 | ATP-dependent DNA helicase RecG [EC:5.6.2.4] | 1 | 7 |
| K03763 | DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] | 0 | 0 |
| K04066 | primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] | 1 | 7 |
| K04067 | primosomal replication protein N'' | 1 | 7 |
| K04482 | DNA repair protein RAD51 | 0 | 0 |
| K04728 | serine-protein kinase ATM [EC:2.7.11.1] | 0 | 0 |
| K06187 | recombination protein RecR | 1 | 7 |
| K07462 | single-stranded-DNA-specific exonuclease [EC:3.1.-.-] | 1 | 7 |
| K07466 | replication factor A1 | 0 | 0 |
| K08775 | breast cancer 2 susceptibility protein | 0 | 0 |
| K08991 | crossover junction endonuclease MUS81 [EC:3.1.22.-] | 0 | 0 |
| K10605 | breast cancer type 1 susceptibility protein [EC:2.3.2.27] | 0 | 0 |
| K10683 | BRCA1-associated RING domain protein 1 | 0 | 0 |
| K10728 | topoisomerase (DNA) II binding protein 1 | 0 | 0 |
| K10739 | replication factor A2 | 0 | 0 |
| K10740 | replication factor A3 | 0 | 0 |
| K10741 | replication factor A4 | 0 | 0 |
| K10865 | double-strand break repair protein MRE11 | 0 | 0 |
| K10866 | DNA repair protein RAD50 [EC:3.6.-.-] | 0 | 0 |
| K10867 | nibrin | 0 | 0 |
| K10868 | DNA repair protein XRS2 | 0 | 0 |
| K10869 | RAD51-like protein 1 | 0 | 0 |
| K10870 | RAD51-like protein 2 | 0 | 0 |
| K10871 | RAD51-like protein 3 | 0 | 0 |
| K10873 | DNA repair and recombination protein RAD52 | 0 | 0 |
| K10875 | DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] | 0 | 0 |
| K10877 | DNA repair and recombination protein RAD54B [EC:5.6.2.-] | 0 | 0 |
| K10879 | DNA-repair protein XRCC2 | 0 | 0 |
| K10880 | DNA-repair protein XRCC3 | 0 | 0 |
| K10881 | 26 proteasome complex subunit DSS1 | 0 | 0 |
| K10882 | crossover junction endonuclease EME1 [EC:3.1.22.-] | 0 | 0 |
| K10897 | partner and localizer of BRCA2 | 0 | 0 |
| K10901 | bloom syndrome protein [EC:5.6.2.4] | 0 | 0 |
| K10957 | DNA repair protein RAD55 | 0 | 0 |
| K10958 | DNA repair protein RAD57 | 0 | 0 |
| K10959 | DNA repair protein RAD59 | 0 | 0 |
| K11864 | BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-] | 0 | 0 |
| K12173 | BRCA1-A complex subunit BRE | 0 | 0 |
| K14159 | ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7] | 0 | 0 |
| K15362 | fanconi anemia group J protein [EC:5.6.2.3] | 0 | 0 |
| K19528 | synaptonemal complex protein 3 | 0 | 0 |
| K20773 | DNA endonuclease RBBP8 [EC:3.1.-.-] | 0 | 0 |
| K20774 | BRCA1-A complex subunit Abraxas | 0 | 0 |
| K20775 | BRCA1-A complex subunit RAP80 | 0 | 0 |
| K20776 | BRISC and BRCA1-A complex member 1 | 0 | 0 |