Homologs in group_683

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_03085 EHELCC_03085 100.0 Morganella morganii S2 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
NLDBIP_00375 NLDBIP_00375 100.0 Morganella morganii S4 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
LHKJJB_01660 LHKJJB_01660 100.0 Morganella morganii S3 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
HKOGLL_01700 HKOGLL_01700 100.0 Morganella morganii S5 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
F4V73_RS05075 F4V73_RS05075 90.1 Morganella psychrotolerans - RidA family protein
PMI_RS13995 PMI_RS13995 73.9 Proteus mirabilis HI4320 - RidA family protein

Distribution of the homologs in the orthogroup group_683

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_683

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O52178 1.34e-10 58 35 6 129 3 dfrA Protein DfrA Myxococcus xanthus
Q8U308 8.08e-10 57 33 6 130 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q97U19 2.73e-09 55 34 5 129 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q9UZA3 2.81e-09 55 33 6 130 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
O58584 7.45e-09 54 31 6 130 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q7CP78 3.98e-08 52 31 7 130 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KWS2 4.99e-08 52 29 5 136 1 amnD 2-aminomuconate deaminase Pseudomonas sp.
O25598 1.26e-07 51 30 4 139 3 HP_0944 RutC family protein HP_0944 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKQ6 1.53e-07 50 30 4 139 3 jhp_0879 RutC family protein jhp_0879 Helicobacter pylori (strain J99 / ATCC 700824)
Q973T6 2.2e-07 50 30 6 128 1 STK_08110 RutC family protein STK_08110 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
P0AGL4 2.71e-07 50 30 8 131 3 tdcF Putative reactive intermediate deaminase TdcF Shigella flexneri
P0AGL2 2.71e-07 50 30 8 131 1 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli (strain K12)
P0AGL3 2.71e-07 50 30 8 131 3 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44839 2.79e-07 50 28 6 140 1 HI_0719 RutC family protein HI_0719 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AF95 5.16e-07 49 31 6 119 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Shigella flexneri
P0AF93 5.16e-07 49 31 6 119 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli (strain K12)
P0AF94 5.16e-07 49 31 6 119 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P52761 4.02e-06 47 29 5 131 3 slr0709 RutC family protein slr0709 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
B1M5I6 4.87e-06 47 29 5 131 3 rutC 3-aminoacrylate deaminase RutC Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1)
Q6FFZ5 7.47e-06 46 28 4 128 3 rutC 3-aminoacrylate deaminase RutC Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
O30825 1.59e-05 45 26 4 125 3 HD_0322 RutC family protein HD_0322 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q9L6B5 1.71e-05 45 28 6 119 3 PM1466 RutC family protein PM1466 Pasteurella multocida (strain Pm70)
P71394 6.49e-05 43 25 4 129 3 HI_1627 RutC family protein HI_1627 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37552 6.55e-05 43 30 5 117 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Bacillus subtilis (strain 168)
P40037 9.66e-05 43 32 4 103 1 HMF1 Protein HMF1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q89AG0 0.000308 42 27 5 131 3 bbp_334 RutC family protein bbp_334 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P97117 0.000388 41 29 4 120 3 None RutC family protein in leuC 5'region Leuconostoc mesenteroides subsp. cremoris

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_02615
Feature type CDS
Gene ridA
Product Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
Location 221641 - 222129 (strand: -1)
Length 489 (nucleotides) / 162 (amino acids)

Contig

Accession contig_2
Length 292399 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_683
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MRYKSLLLALPLVWGAAHASEGVVHHKLNGMPISESVEISSSKNIIFLSGKVPTKISKDAPEGVLASYGNTEAQTINIMEQIKAHLAGLGLEMKDVVKMQVFLVGGEETDGNMDFAGFMAGYSKYYNDKDSGNTLPARTTVQVSKLANPAWRVEIEVTAVRP

Flanking regions ( +/- flanking 50bp)

TTTTAGTTAATTTTCTGATTACTTACGTTGATACTATTAAGAGGCTTAATATGCGTTACAAAAGTTTACTGTTAGCTCTTCCGCTGGTCTGGGGCGCGGCTCACGCGTCAGAAGGTGTTGTTCATCATAAACTGAACGGTATGCCTATCTCTGAATCTGTGGAAATCAGCAGCAGCAAAAATATTATTTTCCTCAGCGGTAAAGTACCGACCAAAATTTCCAAAGACGCACCGGAAGGTGTTCTGGCGTCATACGGCAATACTGAAGCACAGACCATCAATATCATGGAACAGATCAAGGCGCACCTGGCTGGCTTAGGTCTGGAAATGAAGGATGTGGTGAAAATGCAGGTATTCCTGGTCGGCGGCGAAGAGACTGACGGTAATATGGATTTCGCGGGCTTTATGGCCGGTTACTCCAAATATTACAACGACAAAGATTCCGGTAACACATTACCGGCGCGTACCACTGTTCAGGTTTCTAAATTAGCAAACCCGGCATGGCGTGTAGAGATCGAAGTGACAGCTGTTCGTCCGTAATGGTATCAGCGCGTTAACAGCGGGTTTGCCTCCGGAAGGGGCAAACCCGT