Homologs in group_2519

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_02655 EHELCC_02655 100.0 Morganella morganii S2 lsrC autoinducer 2 ABC transporter permease LsrC
NLDBIP_00805 NLDBIP_00805 100.0 Morganella morganii S4 lsrC autoinducer 2 ABC transporter permease LsrC
LHKJJB_01230 LHKJJB_01230 100.0 Morganella morganii S3 lsrC autoinducer 2 ABC transporter permease LsrC
HKOGLL_01270 HKOGLL_01270 100.0 Morganella morganii S5 lsrC autoinducer 2 ABC transporter permease LsrC
F4V73_RS04555 F4V73_RS04555 95.5 Morganella psychrotolerans lsrC autoinducer 2 ABC transporter permease LsrC

Distribution of the homologs in the orthogroup group_2519

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2519

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2PBM2 1.03e-176 495 75 0 331 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
A4TQL6 2.7e-176 495 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 2.7e-176 495 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 2.7e-176 495 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 2.7e-176 495 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 2.7e-176 495 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
B1JLQ1 4.28e-176 494 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 6.14e-176 494 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 6.14e-176 494 76 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q7N2D8 2.04e-175 492 74 0 331 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A7FMJ8 2.44e-175 493 75 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A1JJ54 2.87e-168 475 75 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8Z2X6 3.72e-168 474 75 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q8ZKQ3 2.38e-166 469 75 1 335 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 2.38e-166 469 75 1 335 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57HE2 3.2e-166 469 75 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
Q2PBL9 6.8e-166 468 76 0 313 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
A9MZG2 9.23e-166 468 75 0 332 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
P77672 2.96e-155 441 73 1 333 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 2.96e-155 441 73 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
B1IRU6 1.08e-154 440 73 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 1.08e-154 440 73 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
Q0T4L8 1.13e-154 440 73 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
B1LFA1 1.65e-154 439 73 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
Q8XAY8 1.67e-154 439 74 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q83RD8 3.9e-153 436 73 1 333 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
A4WER3 2.05e-133 386 68 0 322 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
A6TEB7 1.61e-127 371 67 1 334 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B2K3F9 3.45e-35 133 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ2 3.52e-35 133 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 3.52e-35 133 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FMJ9 6.31e-35 133 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL7 9.67e-35 132 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 9.67e-35 132 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 9.67e-35 132 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 9.67e-35 132 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 9.67e-35 132 33 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJ53 6.9e-34 130 32 5 284 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P55569 1.42e-32 126 34 3 261 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q8ZKQ2 4.94e-32 125 31 3 283 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 4.94e-32 125 31 3 283 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 4.94e-32 125 31 3 283 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
P36948 5.14e-32 125 32 1 263 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
Q5PJE5 5.42e-32 125 31 3 283 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q7N2D7 6.58e-32 125 32 3 283 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBM1 1.58e-31 124 34 5 273 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
Q8Z2X7 2.16e-31 123 30 3 283 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q2PBL8 2.85e-31 123 33 3 272 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
P0AGI1 1.11e-30 121 31 4 307 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 1.11e-30 121 31 4 307 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 1.11e-30 121 31 4 307 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P0AE27 1.52e-29 118 31 0 256 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 1.52e-29 118 31 0 256 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
P44736 1.63e-29 118 29 1 285 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44885 1.69e-28 115 27 4 305 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77315 3.33e-27 112 30 3 315 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
Q1JUP6 4.06e-27 112 31 3 277 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
Q4J711 1e-26 111 31 7 316 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P0AFS2 1.32e-26 110 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 1.32e-26 110 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 1.32e-26 110 32 5 288 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 1.32e-26 110 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 1.32e-26 110 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 1.32e-26 110 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
B1LFA0 1.35e-26 110 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
Q8X504 2.49e-26 109 32 5 288 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
P0AGI7 6.57e-26 109 40 0 127 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI7 3.75e-06 52 28 3 146 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 6.57e-26 109 40 0 127 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI4 3.75e-06 52 28 3 146 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 6.57e-26 109 40 0 127 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI5 3.75e-06 52 28 3 146 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 6.57e-26 109 40 0 127 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P0AGI6 3.75e-06 52 28 3 146 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P32720 2.06e-25 107 28 4 285 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
Q8G845 3.02e-23 101 28 5 310 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
Q9F9B1 9.21e-23 100 30 7 280 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
A6TEB6 1.47e-21 96 32 1 260 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P37772 3.02e-20 93 30 8 282 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
P45045 5.13e-20 93 27 8 368 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A4WER2 2.38e-19 90 30 6 288 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
Q8G846 5.8e-18 87 27 4 298 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
P39328 3.84e-16 81 33 3 274 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
P23200 6.98e-15 77 27 5 290 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
Q56036 1.02e-14 77 27 5 290 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57321 1.85e-14 77 24 7 336 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
P0DX44 7.52e-07 53 27 4 211 3 CDR20291_0807 Tyrosine transport system permease protein Clostridioides difficile (strain R20291)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_02185
Feature type CDS
Gene lsrC
Product autoinducer 2 ABC transporter permease LsrC
Location 125813 - 126817 (strand: -1)
Length 1005 (nucleotides) / 334 (amino acids)

Contig

Accession contig_2
Length 292399 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2519
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10556 AI-2 transport system permease protein ABC transporters
Quorum sensing		 -

Protein Sequence

MLKYIQNNREVTALLAILCLFVLLGGMETRYFSLQTVTMIFGSAQIQMLLAIGATLVMLTRNIDVSVGSTTGLCAVIVGIALNAGLPLTVAILLTVAAGLLAGFFNGILVTWLRIPAIVATLGTLGLYRGIMLLLTGGKWIEGLPAELKDLSKPVFLGLSPIGWFIILLIILMTLFLSRTTAGRGFYATGDNLQGARQLGVPVDRTRIIAFSVNGMMAALAGIVFASQIGFIPNQTGNGLEMKAIAACVLGGISLLGGTGTIVGAILGAYFMTQIDSVLVLLRLPAWWNDFIAGFVLLAVLVFDGRLRVALEKNLRAQRYARFLNPSAPQEAKK

Flanking regions ( +/- flanking 50bp)

CACCGCCCGCAGACAGAAACAGAAAGCAGCCCGTTACAGGAGGCCGCATCATGCTGAAATATATCCAGAATAACCGTGAAGTAACGGCACTGCTTGCTATTCTCTGCCTGTTTGTCCTGCTCGGCGGCATGGAAACCCGTTATTTCAGTCTGCAAACCGTCACCATGATTTTCGGCAGTGCGCAAATCCAGATGCTGCTGGCCATCGGTGCCACCCTGGTGATGCTGACCCGTAATATTGATGTGTCTGTCGGATCCACCACCGGGCTGTGTGCAGTGATTGTCGGTATCGCGCTGAATGCGGGACTGCCGCTGACGGTGGCGATCCTGCTGACTGTCGCTGCCGGTCTGCTGGCCGGATTCTTCAACGGCATCCTGGTCACCTGGCTGCGGATCCCCGCCATTGTTGCCACTCTTGGTACCCTCGGGCTGTATCGCGGCATTATGCTGCTGCTCACCGGCGGAAAATGGATTGAAGGTTTACCGGCGGAACTGAAAGATCTGTCAAAACCGGTCTTCCTCGGGCTGTCGCCAATCGGCTGGTTTATTATCCTGCTGATTATTCTGATGACTCTGTTCCTGTCCCGCACCACCGCCGGACGCGGTTTCTACGCCACCGGCGATAACTTACAGGGCGCACGTCAGTTAGGTGTCCCGGTTGACCGTACCCGCATCATTGCCTTCTCTGTAAACGGCATGATGGCGGCACTCGCCGGGATTGTGTTTGCCTCACAAATCGGTTTTATCCCGAATCAGACCGGTAACGGCCTTGAAATGAAAGCCATCGCCGCCTGTGTGCTGGGCGGGATCAGCCTGCTCGGCGGCACCGGTACCATCGTCGGCGCTATCCTCGGTGCCTATTTTATGACTCAGATTGACAGTGTGCTGGTGCTGCTCAGATTGCCGGCCTGGTGGAATGACTTTATCGCCGGCTTTGTTTTACTCGCGGTTCTGGTCTTTGACGGCCGTCTGCGTGTGGCGCTGGAGAAAAACCTCCGCGCCCAGCGCTATGCCCGGTTCCTTAATCCTTCCGCACCGCAGGAGGCGAAAAAATGAGCATCACCAAACGTTATGGCTGGGAAATTGCCCTGGCGCTGCTGATTGTC