Homologs in group_3102

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19565 FBDBKF_19565 71.3 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_16510 EHELCC_16510 71.3 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_16720 NLDBIP_16720 71.3 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_16750 LHKJJB_16750 71.3 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18865 HKOGLL_18865 71.3 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain

Distribution of the homologs in the orthogroup group_3102

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3102

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8TZX4 5.7e-08 52 38 0 52 3 PF1851 Putative HTH-type transcriptional regulatory protein PF1851 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q97QZ2 1.55e-07 50 41 0 56 1 pezA Antitoxin PezA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
O59472 1.61e-07 51 36 0 60 3 PH1808 Putative HTH-type transcriptional regulatory protein PH1808 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P55681 6.9e-07 48 32 0 64 4 NGR_a01020 Uncharacterized HTH-type transcriptional regulator y4wC Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9V1R0 3.91e-06 47 33 0 54 3 PYRAB03670 Putative HTH-type transcriptional regulatory protein PYRAB03670 Pyrococcus abyssi (strain GE5 / Orsay)
Q5JF28 4.34e-05 44 30 2 79 3 TK0539 Putative HTH-type transcriptional regulatory protein TK0539 Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
P0C5S2 4.6e-05 43 28 0 63 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 4.6e-05 43 28 0 63 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
O28481 0.000249 39 36 1 63 4 AF_1793 Uncharacterized HTH-type transcriptional regulator AF_1793 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P23789 0.000284 40 32 1 61 1 xre HTH-type transcriptional regulator Xre Bacillus subtilis (strain 168)
P69202 0.000294 41 31 0 66 1 C2 Repressor protein C2 Salmonella phage P22
C5A6F6 0.001 40 31 1 66 3 TGAM_1316 Putative HTH-type transcriptional regulatory protein TGAM_1316 Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS18565
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 52962 - 53294 (strand: 1)
Length 333 (nucleotides) / 110 (amino acids)

Contig

Accession term accessions NZ_VXKB01000009 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 74461 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3102
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18830 HTH-type transcriptional regulator / antitoxin PezA - -

Protein Sequence

MSNKTDNNLNTSISEMYKMIGGQIRKIRKLTGITSTELAGMIGVSQQQISRYENGSTKISLDIILRISRVFNTSPYYFIDDGLLFFIHHHLPEENTFLHDTGTLLPVPII

Flanking regions ( +/- flanking 50bp)

CTTTAATTTGACAAACATTAATATGTAATTAACCAGACTGACAGATGATAATGAGTAATAAAACAGATAATAACCTGAACACCAGCATCAGCGAGATGTACAAAATGATCGGCGGACAGATCCGCAAGATACGTAAACTAACCGGTATCACATCAACTGAACTCGCCGGGATGATTGGCGTATCACAACAGCAGATATCCCGCTATGAGAATGGCAGTACCAAAATTTCATTAGATATTATTCTGAGGATCTCCCGGGTATTCAATACCTCGCCCTACTATTTTATAGACGATGGTCTGCTCTTCTTTATTCACCATCACCTGCCGGAGGAGAATACCTTTTTGCACGATACCGGGACCCTACTGCCCGTACCGATAATATAATTCATCCCGAAGCAATAACACTCCACAGTGTTATTGCATCCTTTCATTTG