Homologs in group_659

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02290 FBDBKF_02290 37.5 Morganella morganii S1 fepC ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
EHELCC_02760 EHELCC_02760 37.5 Morganella morganii S2 fepC ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
NLDBIP_00700 NLDBIP_00700 37.5 Morganella morganii S4 fepC ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
LHKJJB_01335 LHKJJB_01335 37.5 Morganella morganii S3 fepC ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
HKOGLL_01375 HKOGLL_01375 37.5 Morganella morganii S5 fepC ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
F4V73_RS04665 F4V73_RS04665 35.5 Morganella psychrotolerans - ABC transporter ATP-binding protein

Distribution of the homologs in the orthogroup group_659

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_659

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9UZC8 1.65e-10 68 24 20 426 3 rad50 DNA double-strand break repair Rad50 ATPase Pyrococcus abyssi (strain GE5 / Orsay)
O58687 4.43e-10 66 25 12 285 3 rad50 DNA double-strand break repair Rad50 ATPase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P04522 1.15e-08 61 20 20 628 1 46 Exonuclease subunit 2 Enterobacteria phage T4
O64299 1.05e-07 58 21 21 633 4 46 Exonuclease subunit 2 Escherichia phage RB69
P58301 1.25e-07 58 28 8 187 1 rad50 DNA double-strand break repair Rad50 ATPase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q9RT44 1.32e-07 58 26 5 191 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9HLR8 1.74e-06 55 30 5 171 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q9HLR8 2.44e-05 51 26 7 178 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
D4GUK1 5.08e-06 53 24 14 323 1 rad50 DNA double-strand break repair Rad50 ATPase Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
Q9X1X1 9.36e-06 52 24 6 156 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9HRW3 1.71e-05 52 28 6 152 3 rad50 DNA double-strand break repair Rad50 ATPase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P62134 3.15e-05 51 21 16 390 3 rad50 DNA double-strand break repair Rad50 ATPase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q5JHN1 4.05e-05 50 28 9 185 3 rad50 DNA double-strand break repair Rad50 ATPase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
P58302 6.8e-05 50 23 7 177 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
P58302 0.000339 47 27 4 170 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
P62135 8.69e-05 49 25 12 276 3 rad50 DNA double-strand break repair Rad50 ATPase Nanoarchaeum equitans (strain Kin4-M)
Q97FK1 0.000554 47 30 3 156 3 sbcC Nuclease SbcCD subunit C Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17925
Feature type CDS
Gene -
Product AAA family ATPase
Location 27517 - 29433 (strand: -1)
Length 1917 (nucleotides) / 638 (amino acids)

Contig

Accession term accessions NZ_VXKB01000008 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 103951 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_659
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF13476 AAA domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0419 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD ATPase subunit

Protein Sequence

MKFLKMTVENFMRIAEAEVELNDRGLILIQGKNTDDTSANSNGSGKSTLMNALCWGIYGETANGLKADDVLSTGHEKNCRVSVTIEDEGKRYAIMRHRAHATNKNRLLVSCEDGDLTKGTDKLTQEFIEKLIGASKEVFLASIYASQENMPDLPGMTDKNLKAIVEEAAGVDRLTHSYDIARDRHNAKLAERDGVAGKITVADRAFISALETSEETVMSADEWERARKARIDDAKKAVNEAEVSLTEIEFANADCPSLESIDAKIAGIRTSISGVTEHDKKISDMTTAIAKARAGHGVKRSEIDRLKLQAKNAMEQAAGVSEKVGSPCTECGKPYCEADLATVKKGHTDKARADMVKITETLLPEITVIDEQLTKAEAVLESLKAARPNVDAEMDKVATLQRQRMFLEKSLTAEDTARTALTKARELLTAIESEKNPFTSLIEKTKAEAALLKDDLKTLRVTKEKLDGESDLLEQARKVFSPAGVRSHILSNVTPYLNAKTAEYLNTLSDGSITAVWSTMELTKKGEAKDKFNIAVSKEGASKSFAGLSGGEKRKVRIATALALQDLVASRATKNIQLFIGDEIDDALDVAGLERLMAILEVKARERGTVMIISHKEMKSWFRETITVESKGGRSYVC

Flanking regions ( +/- flanking 50bp)

CTGACGGCGTTGTGTGAAGACGTGTTGTCCCAGGCGGAGGGTAAAGAATAATGAAATTCCTGAAAATGACTGTTGAAAACTTCATGCGGATCGCGGAAGCGGAAGTGGAGCTGAACGACCGTGGCTTGATTCTGATTCAGGGCAAAAATACCGATGATACGTCAGCCAACAGCAACGGATCGGGGAAATCGACTCTGATGAACGCCTTATGCTGGGGCATCTACGGTGAGACAGCTAACGGACTTAAAGCTGACGATGTGCTGAGTACCGGACATGAAAAGAACTGCCGCGTTTCTGTCACCATTGAGGACGAGGGAAAGCGTTATGCAATCATGCGCCACCGCGCTCACGCTACCAACAAAAACCGCCTGTTGGTGTCCTGTGAAGACGGTGATCTGACCAAAGGCACTGATAAGCTGACTCAGGAATTTATTGAAAAGCTAATCGGCGCATCAAAAGAGGTGTTTCTGGCATCAATTTACGCAAGTCAGGAAAACATGCCTGATTTGCCTGGCATGACAGATAAAAACCTGAAAGCTATTGTGGAAGAAGCGGCGGGTGTAGATCGTCTGACCCATTCTTACGATATTGCCCGTGACCGCCACAATGCAAAACTGGCAGAACGTGACGGTGTGGCAGGTAAAATCACAGTTGCGGATCGTGCGTTTATCAGTGCGCTTGAAACATCCGAAGAAACTGTAATGTCCGCCGATGAGTGGGAACGGGCGCGTAAAGCGCGTATTGACGATGCTAAAAAGGCAGTGAACGAAGCAGAGGTATCTCTGACTGAGATTGAGTTTGCCAATGCGGATTGCCCGTCACTTGAAAGTATCGACGCTAAAATCGCTGGCATCCGCACAAGCATTTCCGGCGTGACTGAGCATGATAAAAAAATCAGTGACATGACGACGGCGATTGCCAAAGCCAGGGCGGGGCACGGCGTTAAACGAAGCGAGATTGACCGCCTCAAATTACAGGCTAAGAACGCAATGGAACAGGCGGCTGGTGTCTCTGAGAAAGTCGGGTCGCCGTGTACCGAGTGTGGTAAGCCGTATTGTGAAGCAGATCTGGCGACTGTCAAAAAAGGTCATACGGATAAAGCCCGCGCTGACATGGTGAAAATCACGGAAACCCTGTTGCCGGAAATTACAGTCATTGATGAGCAACTGACCAAAGCAGAGGCGGTACTTGAGTCACTGAAAGCGGCCCGCCCGAACGTTGACGCGGAAATGGATAAGGTTGCCACGCTGCAACGCCAGCGTATGTTTCTGGAAAAGTCACTGACGGCAGAAGATACAGCAAGAACGGCACTGACCAAAGCGCGTGAGCTGCTGACTGCCATTGAGTCAGAGAAAAATCCGTTTACCTCTCTGATTGAGAAGACCAAAGCGGAAGCCGCGCTTCTGAAAGATGATTTAAAGACTTTAAGAGTAACGAAAGAAAAATTAGACGGTGAATCTGATTTACTGGAACAGGCGCGGAAAGTGTTTTCTCCGGCCGGTGTCCGCAGTCATATCCTGTCAAACGTAACGCCGTATCTGAATGCCAAAACAGCGGAGTATCTCAATACACTGTCTGATGGTTCGATCACAGCGGTATGGTCAACGATGGAACTGACCAAAAAAGGCGAAGCGAAAGATAAATTCAATATCGCTGTCAGCAAAGAGGGAGCGAGTAAGTCATTCGCGGGTCTGTCCGGTGGTGAAAAACGTAAAGTGCGTATCGCAACCGCACTGGCATTGCAGGATCTGGTTGCAAGCCGGGCGACGAAAAACATTCAGTTGTTTATCGGGGATGAAATCGATGATGCGCTGGACGTTGCGGGGCTGGAACGTCTCATGGCTATTCTGGAAGTGAAAGCGCGTGAGCGCGGTACTGTCATGATTATCTCTCACAAAGAAATGAAATCATGGTTCAGAGAAACTATCACCGTTGAATCAAAAGGCGGTCGCTCCTATGTCTGCTGAATTTACAAAGGCCGATTTTGTTAAATCGGTACTGGCAATGGTAGATCTGC