Homologs in group_2078

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15545 FBDBKF_15545 91.5 Morganella morganii S1 gadA glutamate decarboxylase
EHELCC_15905 EHELCC_15905 91.5 Morganella morganii S2 gadA glutamate decarboxylase
NLDBIP_16465 NLDBIP_16465 91.5 Morganella morganii S4 gadA glutamate decarboxylase
LHKJJB_16340 LHKJJB_16340 91.5 Morganella morganii S3 gadA glutamate decarboxylase
HKOGLL_16110 HKOGLL_16110 91.5 Morganella morganii S5 gadA glutamate decarboxylase
PMI_RS06805 PMI_RS06805 64.3 Proteus mirabilis HI4320 - glutamate decarboxylase

Distribution of the homologs in the orthogroup group_2078

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2078

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5E5Y7 0.0 631 61 2 464 1 gadA Glutamate decarboxylase Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q54VQ5 0.0 613 60 3 463 2 gadA Glutamate decarboxylase A Dictyostelium discoideum
Q54IJ3 0.0 575 56 3 465 2 gadB Glutamate decarboxylase B Dictyostelium discoideum
Q8FHG5 4.52e-175 501 52 5 459 3 gadB Glutamate decarboxylase beta Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69908 9.29e-175 501 52 5 459 1 gadA Glutamate decarboxylase alpha Escherichia coli (strain K12)
P69909 9.29e-175 501 52 5 459 1 gadA Glutamate decarboxylase alpha Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P58228 1.09e-174 501 52 5 459 3 gadA Glutamate decarboxylase alpha Escherichia coli O157:H7
P69912 4.05e-174 499 51 5 459 3 gadB Glutamate decarboxylase beta Shigella flexneri
P69910 4.05e-174 499 51 5 459 1 gadB Glutamate decarboxylase beta Escherichia coli (strain K12)
P69911 4.05e-174 499 51 5 459 3 gadB Glutamate decarboxylase beta Escherichia coli O157:H7
Q83PR1 8.89e-174 498 51 5 459 3 gadA Glutamate decarboxylase alpha Shigella flexneri
O30418 2.31e-154 449 46 5 452 1 gadB Glutamate decarboxylase Lactococcus lactis subsp. cremoris (strain MG1363)
Q928R9 3.23e-154 448 46 5 457 3 gadB Glutamate decarboxylase beta Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9CG20 1.77e-153 447 46 5 452 1 gadB Glutamate decarboxylase Lactococcus lactis subsp. lactis (strain IL1403)
Q9EYW9 2.64e-153 446 46 4 458 3 gadB Glutamate decarboxylase beta Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q8Y4K4 6.22e-150 437 47 4 447 3 lmo2434 Probable glutamate decarboxylase gamma Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q928K4 2.17e-149 436 46 4 447 3 lin2528 Probable glutamate decarboxylase gamma Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P54767 2.17e-148 435 46 6 464 2 None Glutamate decarboxylase Solanum lycopersicum
Q9LSH2 7.42e-147 431 48 4 446 2 GAD5 Glutamate decarboxylase 5 Arabidopsis thaliana
Q07346 1.93e-146 430 47 5 457 1 GAD Glutamate decarboxylase Petunia hybrida
Q9F5P3 5.5e-145 425 44 4 458 3 gadA Glutamate decarboxylase alpha Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q42521 7.88e-145 426 47 5 447 1 GAD1 Glutamate decarboxylase 1 Arabidopsis thaliana
Q9ZPS3 9.58e-145 426 47 4 450 1 GAD4 Glutamate decarboxylase 4 Arabidopsis thaliana
Q42472 1.02e-144 426 48 4 441 1 GAD2 Glutamate decarboxylase 2 Arabidopsis thaliana
Q9ZPS4 1.95e-137 407 45 4 450 2 GAD3 Glutamate decarboxylase 3 Arabidopsis thaliana
Q04792 2.27e-110 340 42 11 463 1 GAD1 Glutamate decarboxylase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O58679 1.34e-31 127 25 14 433 1 mfnA L-aspartate/L-glutamate decarboxylase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q0W498 2.83e-31 127 31 7 301 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
A0B9M9 2.15e-30 124 27 13 417 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)
Q5R4G0 1.44e-29 124 26 11 384 2 SGPL1 Sphingosine-1-phosphate lyase 1 Pongo abelii
Q9UZD5 2.93e-29 121 26 12 383 3 mfnA Probable L-aspartate decarboxylase Pyrococcus abyssi (strain GE5 / Orsay)
O95470 4.54e-29 123 26 12 383 1 SGPL1 Sphingosine-1-phosphate lyase 1 Homo sapiens
Q12VA2 7.12e-29 120 29 10 323 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Q8R0X7 2.35e-28 121 24 10 417 1 Sgpl1 Sphingosine-1-phosphate lyase 1 Mus musculus
Q8U1P6 3.56e-28 118 26 12 392 3 mfnA Probable L-aspartate decarboxylase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q8CHN6 1.2e-26 116 24 9 382 2 Sgpl1 Sphingosine-1-phosphate lyase 1 Rattus norvegicus
Q8TV92 8.01e-26 111 29 10 289 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q9V7Y2 9.94e-26 113 26 10 332 1 Sply Sphingosine-1-phosphate lyase Drosophila melanogaster
Q2FSD2 5.74e-25 108 28 11 322 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
C5A2X8 9.58e-25 108 24 16 421 3 mfnA Probable L-aspartate decarboxylase Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Q52RG7 5.71e-24 108 24 13 388 2 SPL Sphingosine-1-phosphate lyase Oryza sativa subsp. japonica
Q5JJ82 6.61e-23 103 28 12 325 1 mfnA L-aspartate decarboxylase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
A2STQ3 9.7e-23 102 29 9 278 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
O27188 3.58e-22 100 26 18 399 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q46DU3 4.08e-22 101 24 13 419 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina barkeri (strain Fusaro / DSM 804)
A5ULW4 7.04e-22 100 25 16 385 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)
Q8PXA5 1.22e-21 99 24 16 419 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q9Y194 1.59e-21 100 26 12 334 1 spl-1 Sphingosine-1-phosphate lyase Caenorhabditis elegans
Q05567 5.9e-21 99 24 9 341 1 DPL1 Sphingosine-1-phosphate lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O28275 9.98e-21 96 27 10 288 3 mfnA Probable L-aspartate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q8TUQ9 1.27e-20 97 26 11 339 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q2NHY7 5.5e-20 94 24 12 361 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
Q9C509 6.27e-20 95 24 12 387 1 DPL1 Sphingosine-1-phosphate lyase Arabidopsis thaliana
A3CWM4 4.3e-19 92 26 9 288 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Q54RV9 2.03e-18 91 20 11 394 2 sglA Sphingosine-1-phosphate lyase Dictyostelium discoideum
Q3IT46 3.74e-17 85 27 14 357 3 mfnA Probable L-aspartate decarboxylase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
A7IAB9 5.95e-17 85 26 10 309 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
B8GDM7 1.38e-16 84 26 12 304 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
Q5V1B4 1.12e-13 75 27 13 323 3 mfnA Probable L-aspartate decarboxylase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
A6UVR4 4.94e-13 73 24 14 334 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
A6URB4 3.82e-12 71 24 9 286 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
Q5WUR6 4.76e-12 71 22 13 371 3 lpl2102 Probable sphingosine-1-phosphate lyase Legionella pneumophila (strain Lens)
Q5ZTI6 7.11e-12 71 23 11 323 3 lpg2176 Probable sphingosine-1-phosphate lyase Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
J7SZ64 9.26e-12 70 25 7 274 1 CLOSPO_02083 Tryptophan decarboxylase Clostridium sporogenes (strain ATCC 15579)
Q5X3A8 1.67e-11 70 23 11 323 1 lpp2128 Probable sphingosine-1-phosphate lyase Legionella pneumophila (strain Paris)
A4G060 6e-11 67 24 14 332 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
Q60358 1.07e-10 67 24 10 287 1 mfnA L-tyrosine/L-aspartate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9HSA3 1.76e-10 65 25 13 379 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R349 1.76e-10 65 25 13 379 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
A6VIC0 1.79e-10 66 23 14 332 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Q6M0Y7 5.34e-10 64 23 13 334 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q7X8D4 2.55e-08 59 28 7 181 3 LOC_Os04g04640 Serine decarboxylase 3 Oryza sativa subsp. japonica
Q98A07 5.3e-07 55 31 4 138 3 hdc Histidine decarboxylase Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
A7MVI6 1.94e-06 53 24 6 199 3 hdc Histidine decarboxylase Vibrio campbellii (strain ATCC BAA-1116)
A0A0A2IDH4 3e-06 53 32 5 146 1 cnsB L-tryptophan decarboxylase cnsB Penicillium expansum
Q9MA74 4.5e-05 49 26 6 161 1 SDC Serine decarboxylase Arabidopsis thaliana
A3M7A4 0.000125 47 27 5 161 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
Q1IAK7 0.000235 47 27 5 160 3 hdc Histidine decarboxylase Pseudomonas entomophila (strain L48)
P05034 0.000351 46 26 5 160 1 hdc Histidine decarboxylase Morganella morganii

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17605
Feature type CDS
Gene -
Product glutamate decarboxylase
Location 158137 - 159519 (strand: -1)
Length 1383 (nucleotides) / 460 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2078
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00282 Pyridoxal-dependent decarboxylase conserved domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0076 Amino acid transport and metabolism (E) E Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Kegg Ortholog Annotation(s)

Protein Sequence

MSLHAVKTKNSSEFIDVYASVDADTTLPKYKIPEESSDPRIVYSVVRDELLLDGNSRQNLATFCTTWVEDEVKQLMTDSVDKNMIDKDEYPQTAEIESRCVHIIADLWHSPQAEDTIGCSTTGSSEAAMLGGLAMKWRWRKKREAQGKDTTKPNMVTGPVQVCWEKFARYFDVEIRQVPLKGNALGMQPADLREYCDENTIGVVATLGVTFTGIYEPVEALAKELDAIERDTGLDIPLHVDGASGGFIAPFIQPELVWDFRIERVKSINSSGHKYGLSPLGVGWVVWRSKEDLPEELIFSVDYLGGNMPTFALNFSRPGGQIIAQYYNFLRLGRAGYTKIQQSCADTAQWLAQELNKLGIFELVYDGHGALPAVAYKLKPEVTQFNLYDLSDRIRARGWLIASYPLPADREQTVVQRIMIRHGVSRDLAALLLDDIERAIDHFRQNPVVRSTAKATFHHG

Flanking regions ( +/- flanking 50bp)

TGATGTTAATTATTTCTTATGGTTAATAAAAGGGAAGTGAGGAAAATATTATGTCTCTTCATGCTGTGAAAACCAAGAATAGTTCAGAATTTATTGATGTTTATGCGTCAGTGGATGCAGATACAACATTGCCTAAATATAAGATTCCGGAAGAGAGCAGTGATCCCCGGATTGTCTACAGTGTTGTGCGTGATGAGTTGTTATTGGATGGTAATTCACGCCAGAACCTGGCGACATTCTGTACGACCTGGGTCGAGGATGAAGTTAAGCAACTGATGACAGACAGTGTCGATAAAAATATGATCGACAAAGATGAATATCCGCAAACGGCTGAAATAGAAAGCCGTTGTGTGCATATTATTGCCGATCTCTGGCACTCACCACAGGCTGAAGACACTATCGGCTGCTCTACAACTGGGTCCAGTGAAGCTGCCATGCTCGGCGGGCTGGCAATGAAATGGCGCTGGCGTAAAAAGCGTGAAGCGCAGGGTAAAGATACAACAAAACCAAATATGGTGACCGGGCCGGTTCAGGTGTGCTGGGAAAAATTCGCCCGCTATTTTGATGTGGAAATCCGCCAGGTGCCGCTGAAAGGTAATGCATTAGGTATGCAACCTGCTGATTTACGTGAATATTGTGATGAAAATACTATCGGCGTAGTTGCAACGCTCGGGGTAACGTTTACCGGTATTTATGAGCCGGTGGAGGCACTGGCAAAAGAGCTGGATGCCATTGAACGCGATACCGGACTGGATATTCCTCTGCATGTGGATGGCGCCAGCGGCGGGTTTATTGCACCGTTTATTCAGCCGGAACTGGTATGGGATTTCCGTATTGAGCGCGTGAAATCGATTAACAGCTCAGGACACAAGTACGGTTTATCCCCGCTGGGTGTGGGCTGGGTTGTCTGGCGCAGTAAAGAGGATTTACCGGAAGAATTGATTTTTAGTGTGGATTATCTCGGCGGTAATATGCCGACGTTTGCCCTGAACTTCTCCCGCCCGGGCGGGCAAATCATTGCTCAGTATTATAATTTCCTGCGTCTTGGTCGTGCCGGTTATACCAAAATTCAGCAATCCTGCGCGGATACGGCACAGTGGCTGGCTCAGGAACTGAATAAACTGGGGATTTTCGAACTGGTTTATGACGGGCACGGCGCATTACCGGCGGTTGCTTACAAACTGAAGCCGGAAGTCACACAGTTTAATCTCTACGATCTCTCTGACCGAATCCGGGCGCGCGGCTGGCTGATTGCCTCTTACCCGCTGCCGGCAGACAGGGAGCAAACCGTAGTTCAGCGGATTATGATCCGCCATGGTGTCAGCCGTGATTTGGCGGCACTGTTGCTGGATGATATTGAGCGGGCTATCGATCACTTCAGACAAAACCCGGTGGTGAGATCTACGGCGAAAGCGACTTTCCATCACGGCTGACCAAACAGTTCCTCCGGCAGATGAGTTGCCGGAGGCTCTCCTTTATGTTT