Homologs in group_2169

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16310 FBDBKF_16310 92.9 Morganella morganii S1 rfaF ADP-heptose--LPS heptosyltransferase RfaF
EHELCC_16345 EHELCC_16345 92.9 Morganella morganii S2 rfaF ADP-heptose--LPS heptosyltransferase RfaF
NLDBIP_16995 NLDBIP_16995 92.9 Morganella morganii S4 rfaF ADP-heptose--LPS heptosyltransferase RfaF
LHKJJB_16915 LHKJJB_16915 92.9 Morganella morganii S3 rfaF ADP-heptose--LPS heptosyltransferase RfaF
HKOGLL_16925 HKOGLL_16925 92.9 Morganella morganii S5 rfaF ADP-heptose--LPS heptosyltransferase RfaF
PMI_RS15700 PMI_RS15700 74.3 Proteus mirabilis HI4320 rfaF ADP-heptose--LPS heptosyltransferase RfaF

Distribution of the homologs in the orthogroup group_2169

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2169

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37692 0.0 533 74 1 344 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P37421 0.0 533 74 1 344 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45042 3.28e-147 422 60 6 349 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7VNA4 2.11e-146 420 59 7 351 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q0P9A8 2.12e-23 102 23 7 348 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P0DX62 4e-19 90 22 9 351 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
Q9HUF5 8.43e-10 63 29 9 216 3 waaC Lipopolysaccharide heptosyltransferase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P25742 1.94e-09 62 25 14 356 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli (strain K12)
Q9R9D5 5.36e-08 57 25 12 348 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli
P24173 2.33e-07 55 28 3 149 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli (strain K12)
P26469 2.33e-07 55 29 5 148 3 waaC Lipopolysaccharide heptosyltransferase 1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0DX54 3.85e-07 54 30 1 113 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli O18:K1:H7 (strain RS218 / NMEC)
Q57336 2.98e-06 52 21 11 303 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O87333 8.3e-05 47 22 15 362 3 waaC Lipopolysaccharide heptosyltransferase 1 Campylobacter coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17280
Feature type CDS
Gene rfaF
Product ADP-heptose--LPS heptosyltransferase RfaF
Location 88498 - 89559 (strand: 1)
Length 1062 (nucleotides) / 353 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2169
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02843 lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG013401 ADP-heptose-LPS heptosyltransferase II VF0044 Immune modulation

Protein Sequence

MKILVIGPSWVGDMMMSQSLYRTLKIRYPQATIDVMAPAWCRPLLEKMPEVDEAIAMPLGHGAFALGERWRLGHALRDNKYDRAYVLPNSFKSALVPFFANIPVRTGWLGEMRYGLLNDHRKLDKPAFPLMVQRYVALAYDKADVPDAGAIPQPLLWPKLAVRDEDIAESMAAFNIGDHRPVVGFCPGAEFGPAKRWPHYHYGELAKKLIDERDFQIILFGSEKDHAAGEDILAGLSDEQRDNCLNLAGKTSLEQAVNLIAGCHAVISNDSGLMHVAAALDRPLVALYGPSSPDFTPPLSEKARVIRLITGYHKVRKGDAHEGYHQSLVDIQPERVLAELDDLLKSTPPCAVC

Flanking regions ( +/- flanking 50bp)

TGTTCACGAATACATGATTTGGTTAAATCAGGGAAATTAAGTAAACACACATGAAAATTCTGGTGATCGGGCCATCGTGGGTCGGTGACATGATGATGTCACAAAGCCTTTACCGTACCCTGAAAATACGTTACCCGCAGGCAACGATAGATGTAATGGCGCCCGCCTGGTGCCGTCCGCTGCTGGAGAAAATGCCGGAAGTGGATGAGGCAATCGCCATGCCGCTGGGCCACGGCGCATTTGCCCTTGGTGAGCGCTGGCGTCTTGGTCATGCCCTGCGTGATAATAAGTATGATCGTGCTTATGTGCTGCCAAACTCATTCAAATCAGCCCTGGTGCCGTTTTTTGCAAACATTCCGGTACGCACCGGCTGGCTGGGTGAAATGCGTTACGGGCTGCTTAACGATCACCGGAAACTTGATAAACCCGCTTTCCCGCTGATGGTTCAGCGTTATGTCGCGCTCGCGTACGACAAGGCAGATGTACCGGATGCCGGGGCTATCCCGCAGCCGCTGTTATGGCCGAAGCTGGCGGTGCGTGATGAAGATATCGCTGAAAGTATGGCGGCATTTAATATCGGCGATCACCGCCCGGTTGTCGGGTTTTGTCCCGGTGCAGAATTCGGTCCGGCCAAACGCTGGCCGCATTATCACTACGGTGAATTAGCCAAAAAACTCATTGATGAGCGTGATTTTCAAATCATCCTGTTCGGTTCAGAGAAAGATCACGCTGCCGGGGAAGATATTCTTGCCGGGCTCAGTGATGAGCAACGCGATAACTGCCTGAATCTCGCAGGGAAAACCTCGCTGGAACAAGCGGTTAACCTGATCGCAGGTTGCCACGCTGTTATCTCTAATGATTCCGGTCTGATGCATGTGGCAGCAGCACTTGATCGCCCTCTGGTCGCCTTATATGGTCCGAGCAGCCCGGATTTTACGCCGCCGCTGTCAGAAAAAGCCCGCGTTATCCGCCTTATCACCGGCTATCACAAAGTCCGCAAAGGCGATGCTCACGAGGGATACCATCAGAGCCTGGTCGATATTCAGCCTGAACGTGTTCTGGCAGAACTCGATGATTTACTCAAGAGCACTCCGCCATGCGCCGTGTGTTAATTGTCAAAACCTCATCCATGGGCGATGTGCTGCATACATTGCCCGCACTG