Homologs in group_2269

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17445 FBDBKF_17445 65.3 Morganella morganii S1 sbcC exonuclease subunit SbcC
EHELCC_17340 EHELCC_17340 65.3 Morganella morganii S2 sbcC exonuclease subunit SbcC
NLDBIP_17855 NLDBIP_17855 65.3 Morganella morganii S4 sbcC exonuclease subunit SbcC
LHKJJB_17775 LHKJJB_17775 65.3 Morganella morganii S3 sbcC exonuclease subunit SbcC
HKOGLL_17785 HKOGLL_17785 65.3 Morganella morganii S5 sbcC exonuclease subunit SbcC
PMI_RS00240 PMI_RS00240 45.9 Proteus mirabilis HI4320 - AAA family ATPase

Distribution of the homologs in the orthogroup group_2269

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2269

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13458 9.1e-109 370 63 1 294 1 sbcC Nuclease SbcCD subunit C Escherichia coli (strain K12)
P13458 1.42e-77 281 57 1 300 1 sbcC Nuclease SbcCD subunit C Escherichia coli (strain K12)
Q9HWB8 2.05e-48 192 47 3 230 3 sbcC Nuclease SbcCD subunit C Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O68032 1.01e-35 151 46 1 189 3 sbcC Nuclease SbcCD subunit C Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9KM67 1.07e-29 132 35 12 306 3 sbcC Nuclease SbcCD subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KM67 2.83e-18 94 30 6 247 3 sbcC Nuclease SbcCD subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q4L655 2.2e-25 117 47 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus haemolyticus (strain JCSC1435)
Q4L655 1.9e-06 56 25 9 230 3 sbcC Nuclease SbcCD subunit C Staphylococcus haemolyticus (strain JCSC1435)
Q5HPJ3 1.58e-23 112 46 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5HPJ3 2.06e-07 59 26 7 187 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CPC5 1.73e-23 111 46 4 136 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q8CPC5 2.44e-07 59 26 7 187 3 sbcC Nuclease SbcCD subunit C Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q9RT44 1.29e-22 108 42 2 128 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9RT44 4.43e-18 94 30 9 260 3 sbcC Nuclease SbcCD subunit C Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q6GH60 2.19e-22 108 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MRSA252)
Q6GH60 2.34e-09 65 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MRSA252)
Q7A5S6 2.64e-22 107 45 4 143 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain N315)
Q7A5S6 5.2e-09 64 27 9 220 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain N315)
Q99UD0 2.64e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q99UD0 5.2e-09 64 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu50 / ATCC 700699)
A5ISM9 2.64e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH9)
A5ISM9 5.2e-09 64 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH9)
A6U1G7 2.64e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH1)
A6U1G7 5.2e-09 64 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain JH1)
A7X203 2.64e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu3 / ATCC 700698)
A7X203 5.2e-09 64 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q2YXX0 2.78e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2YXX0 4.81e-09 64 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2FH88 3.02e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300)
Q2FH88 3.02e-09 65 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300)
A8Z219 3.05e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300 / TCH1516)
A8Z219 3.26e-09 65 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain USA300 / TCH1516)
A6QGP8 3.05e-22 107 45 4 143 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Newman)
A6QGP8 3.26e-09 65 27 9 220 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain Newman)
Q5HG72 3.05e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain COL)
Q5HG72 3.26e-09 65 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain COL)
Q8NWV1 3.07e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MW2)
Q8NWV1 3.23e-09 65 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MW2)
Q97FK1 3.09e-22 107 34 5 185 3 sbcC Nuclease SbcCD subunit C Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q97FK1 4e-21 104 38 4 157 3 sbcC Nuclease SbcCD subunit C Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q6G9L2 3.32e-22 107 45 4 143 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MSSA476)
Q6G9L2 3.55e-09 65 27 9 220 3 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain MSSA476)
Q2FYT3 2.02e-21 105 44 4 143 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FYT3 3.29e-09 65 27 9 220 1 sbcC Nuclease SbcCD subunit C Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q49XE1 3.21e-21 104 47 5 129 3 sbcC Nuclease SbcCD subunit C Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q49XE1 5.7e-09 64 25 7 210 3 sbcC Nuclease SbcCD subunit C Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
O67124 6.02e-20 100 34 4 179 3 rad50 Probable DNA double-strand break repair Rad50 ATPase Aquifex aeolicus (strain VF5)
O67124 1.38e-17 92 35 4 145 3 rad50 Probable DNA double-strand break repair Rad50 ATPase Aquifex aeolicus (strain VF5)
O83635 1.06e-19 99 34 6 180 3 sbcC Nuclease SbcCD subunit C Treponema pallidum (strain Nichols)
O83635 4.11e-11 71 28 4 213 3 sbcC Nuclease SbcCD subunit C Treponema pallidum (strain Nichols)
Q9CFZ0 6.25e-19 97 41 7 147 3 sbcC Nuclease SbcCD subunit C Lactococcus lactis subsp. lactis (strain IL1403)
Q9CFZ0 9.7e-05 50 27 6 167 3 sbcC Nuclease SbcCD subunit C Lactococcus lactis subsp. lactis (strain IL1403)
O06714 2.15e-17 92 32 6 189 3 sbcC Nuclease SbcCD subunit C Bacillus subtilis (strain 168)
O06714 9.96e-11 70 36 3 152 3 sbcC Nuclease SbcCD subunit C Bacillus subtilis (strain 168)
Q58718 1.05e-10 70 24 3 175 1 rad50 DNA double-strand break repair Rad50 ATPase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8TXI4 2.9e-07 58 29 8 191 3 rad50 DNA double-strand break repair Rad50 ATPase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q9X1X1 3.9e-07 58 30 5 128 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9X1X1 1.76e-06 56 25 3 148 1 rad50 DNA double-strand break repair Rad50 ATPase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P62134 4.83e-07 58 24 4 153 3 rad50 DNA double-strand break repair Rad50 ATPase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
P41003 0.000115 50 22 14 391 1 cut14 Structural maintenance of chromosomes protein 2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P58302 0.00026 49 25 6 156 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
Q9HLR8 0.000531 48 28 8 174 3 rad50 DNA double-strand break repair Rad50 ATPase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q9HRW3 0.001 47 30 5 145 3 rad50 DNA double-strand break repair Rad50 ATPase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16620
Feature type CDS
Gene -
Product SbcC/MukB-like Walker B domain-containing protein
Location 144548 - 148234 (strand: 1)
Length 3687 (nucleotides) / 1228 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2269
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13476 AAA domain
PF13558 SbcC/RAD50-like, Walker B motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0419 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD ATPase subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03546 DNA repair protein SbcC/Rad50 - -

Protein Sequence

MKILTLRFKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHRTPRVETSASHNDVMTRHTAECLAEVEFSVKGKAYRAFWSQRRARDKADGNLQAPKAEVAECATGKILSDKLTQVRETIIQITGLDFARFTRSVLLSQGNFAAFLNADDNERADLLEELTGTEIYRIISRQVFEQHKEARHELDRLEAQASAIRLLTPEQYQQCRDELDSLQTEEKTQRNLQTEIQTVLRWWQQKNELNTETTQHQQQHAAVMQQVQDAQPQLIVLHRGRPAEKLRPARDALIRSREMNAQLDARLQELQQITETVIPELSALGAQYETQQTALNAHRLHCQELETLAENEIRPLDNQLQLLSNQLSTQQQQHQNSQTEQQELQSQTIQLQEKLALIRSTHERNLLWHNENHQRETLPAAIAQWQHQLQDRYKNSEQIRLISEKQRANEQQQKTLIATLSQLSDNYTVKQQTTAPLRSQLITLQTQLQDAQLAAGTDTLRLQLKQAGEQQQWLQKLSQLSPQTALLTRNKENTLRDREQTQHDITALTDWCAQQAPVLAEKQQHLRDLTARLQLEQTIIRLDAERQRLQSGEPCPLCGSTNHPAVTDYQQITPDDTTQRLDALTRDVRQAEQALAAKQNLLALTQTQRDTLSRALQETEHSLTQLTAQWQAACTGGGFTALQTSPEDLPGVILQSDELYQQKQQELEKRLALETQILQHQNTLQTAEADCERLLQTRQTTEREQQYLLQQYTEYNVQLAQLRQQQQLLEETLTHAVTAFGYTVPAPERTDVWLAQCQQDSEQFTANEQHIRQSTQQLAELTAQQQNLDALSAKLTRHLAEQSVALNEISKQHQLMSEKRRHLFGDKIISTELQRMHIQRQTQETLLTTLAQKREKLQNRLSGLQGEEKRMQQQRLDAQAQQEKEQIRFQQHLTDSPFTDETDFLAALLSEKDNLRLETLENELNLAQLKAATSLSDSQSRQARHLENQPETHRELTPEQLNEKETLLAQQLRAISVREGELQGQLSTDNTQRVQQGGLLNLIAQSQQEYTDWSRLNLLIGSAEGTKFSRFAQGLTLDYLIHLANKRLDKLHGRYVLQRKSGESLELQVTDTWQADAQRDTKTLSGGETFLVSLALALALSDLVSHKTQIESLFLDEGFGTLDQETLDIALDALDNLNASGKTIGVISHIDAMKERIAVQISVRKMNGLGISKLSPEYRVTPE

Flanking regions ( +/- flanking 50bp)

TTCCGGCAGGTCTGTCAGCAGGTCAGTGAGGATCAGAAGGTAAAAAGCGAATGAAAATCCTGACATTACGTTTCAAAAATATTAATTCCCTTCAGGGCGAATGGAAAATTGATTTCACAGCAGAGCCTTTCGCCAGTAACGGTTTATTTGCCATTACCGGCCCTACCGGTGCCGGAAAAACAACACTGCTTGATGCTATCTGCCTTGCGCTTTATCACAGGACTCCCCGGGTGGAAACGTCCGCATCCCACAATGATGTGATGACACGCCATACCGCAGAATGTCTTGCTGAGGTCGAATTTTCTGTAAAAGGGAAAGCCTACCGCGCCTTCTGGAGCCAGCGCCGCGCCAGAGATAAAGCTGACGGCAACCTCCAGGCACCGAAAGCAGAAGTGGCAGAGTGCGCCACCGGAAAAATATTGTCCGATAAACTGACACAGGTGCGGGAAACCATCATTCAGATAACCGGGCTGGACTTTGCCCGTTTTACCCGTTCTGTTCTGTTATCACAGGGAAATTTTGCCGCTTTTTTAAATGCTGATGATAATGAACGGGCTGATTTACTCGAAGAACTAACCGGGACTGAAATCTACCGGATTATCTCCCGCCAGGTATTTGAACAACACAAAGAAGCCCGCCATGAACTGGACAGGCTGGAAGCACAGGCATCGGCCATCCGTCTGCTGACACCTGAACAATATCAGCAGTGTCGCGATGAACTTGATTCTCTGCAAACGGAAGAAAAAACACAGCGTAATCTGCAAACGGAGATACAAACTGTACTCCGCTGGTGGCAGCAAAAAAATGAGCTTAATACAGAAACCACACAGCACCAACAACAGCATGCCGCTGTCATGCAACAGGTTCAGGACGCACAGCCACAGCTCATTGTATTACACAGAGGGCGACCGGCAGAAAAACTGCGCCCCGCAAGGGACGCACTGATACGCAGCAGGGAAATGAACGCACAACTGGATGCCCGTTTACAGGAGTTGCAGCAAATAACGGAAACGGTAATCCCGGAACTTTCGGCCCTGGGCGCACAGTATGAAACACAACAAACTGCATTAAATGCGCATCGCCTGCACTGCCAGGAACTGGAAACACTGGCAGAAAATGAAATTCGTCCGCTGGATAATCAATTACAGCTGCTCAGTAACCAACTGAGTACACAGCAACAGCAACATCAGAACTCACAGACTGAACAGCAGGAACTGCAATCTCAAACGATTCAGTTACAGGAAAAGCTGGCACTGATACGCAGTACACACGAACGCAACCTGCTCTGGCACAATGAAAACCATCAGAGAGAAACGCTTCCGGCAGCAATAGCACAATGGCAGCATCAGTTGCAGGACAGGTATAAAAACAGTGAACAAATACGCCTTATTTCTGAGAAACAACGGGCTAACGAACAACAACAGAAAACACTGATCGCCACACTCAGCCAATTATCAGATAACTACACAGTAAAACAGCAGACTACCGCACCGCTGCGCTCACAACTGATAACACTGCAAACACAGTTGCAGGATGCACAACTGGCAGCCGGAACAGATACACTCCGGTTACAGCTGAAACAGGCAGGTGAGCAGCAACAGTGGCTGCAAAAATTGTCGCAGTTATCACCACAGACAGCCCTGCTGACCCGGAACAAAGAAAACACGCTGCGGGACAGAGAACAAACACAACACGATATTACTGCCCTTACCGACTGGTGCGCACAACAAGCCCCTGTTCTGGCAGAGAAACAACAGCACCTGCGTGACCTGACAGCACGACTGCAACTGGAGCAGACTATCATCCGTCTGGATGCGGAGCGTCAGCGGTTGCAATCCGGAGAACCATGCCCGTTGTGCGGCAGTACCAACCACCCGGCGGTGACAGATTATCAGCAGATAACACCTGATGACACAACACAGCGTCTGGATGCACTGACGCGCGATGTCCGGCAAGCTGAACAGGCGCTGGCAGCAAAACAAAATTTGCTGGCGCTGACACAAACACAACGTGACACCCTCTCCCGCGCCTTGCAGGAGACAGAACACAGCCTTACACAGCTGACCGCTCAATGGCAGGCAGCCTGTACCGGTGGCGGATTTACCGCTTTACAGACATCACCTGAGGATCTGCCCGGCGTCATACTACAATCTGATGAACTATATCAGCAAAAACAGCAGGAACTGGAAAAACGTCTCGCGCTGGAAACACAGATTTTACAGCATCAGAACACATTACAAACCGCAGAAGCTGACTGCGAACGCCTGTTACAAACCAGACAAACCACGGAGCGGGAACAGCAATACCTGCTGCAACAATATACTGAATATAATGTGCAGCTTGCACAACTCCGGCAGCAACAACAGTTACTGGAAGAGACACTGACACACGCCGTCACCGCCTTCGGCTATACCGTCCCTGCCCCGGAACGAACGGATGTCTGGCTGGCACAATGTCAGCAGGATAGTGAGCAATTCACCGCAAATGAACAGCATATCCGGCAAAGTACCCAACAATTGGCTGAACTGACGGCACAACAACAAAACCTGGATGCGCTTTCAGCCAAACTGACCCGCCACCTGGCTGAGCAGTCTGTCGCGCTGAATGAAATCAGCAAACAACATCAGCTTATGTCAGAAAAGCGCCGGCATTTATTTGGTGACAAAATTATCAGTACCGAATTACAACGAATGCATATCCAGCGGCAGACACAGGAAACGCTGCTGACTACGCTGGCACAAAAACGGGAAAAATTACAAAACAGGCTCTCCGGCTTACAGGGAGAGGAAAAACGCATGCAACAGCAGCGCCTGGATGCACAGGCTCAACAGGAAAAAGAACAGATCCGTTTTCAGCAGCACCTGACAGACAGCCCGTTTACAGATGAAACTGATTTCCTCGCCGCACTGCTGAGTGAAAAAGACAACCTCCGCCTGGAAACGCTGGAAAATGAACTGAATCTGGCACAATTGAAAGCCGCCACAAGCCTGAGCGACAGCCAGTCCCGTCAGGCCCGGCATCTGGAAAATCAGCCGGAAACACACCGGGAACTGACACCGGAACAACTTAATGAAAAAGAGACACTTCTGGCACAGCAACTGCGGGCTATCAGTGTCCGTGAGGGCGAACTACAGGGGCAGCTCAGTACCGATAATACTCAGCGCGTTCAGCAGGGCGGTCTGCTTAATCTGATTGCACAAAGTCAGCAGGAATACACCGACTGGAGTCGGCTGAACCTTTTGATTGGTTCCGCTGAAGGCACAAAATTCAGCCGTTTTGCCCAGGGGCTGACGCTGGATTATCTGATTCACCTGGCAAATAAGCGACTGGATAAATTGCACGGACGTTATGTGTTGCAACGTAAGTCAGGAGAAAGCCTGGAGCTTCAGGTTACCGATACCTGGCAGGCCGATGCACAACGTGACACCAAAACCCTCTCCGGCGGGGAAACGTTTCTGGTCAGCCTTGCGCTGGCTCTCGCGTTGTCAGATCTGGTCAGTCATAAAACACAAATTGAGTCCCTTTTCCTTGATGAAGGGTTCGGCACACTAGACCAGGAAACACTGGATATTGCACTTGATGCCCTGGATAACCTGAATGCGTCCGGTAAGACAATCGGCGTTATCAGCCACATAGACGCCATGAAAGAACGCATTGCGGTACAGATCTCTGTCAGAAAAATGAACGGACTGGGGATCAGTAAATTATCACCGGAATACAGAGTAACGCCTGAATGACATCTAAAAAAACAGCGTAAAAACGATAACAATCAATTGAAATTTATTGT