Homologs in group_2256

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17380 FBDBKF_17380 90.5 Morganella morganii S1 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
EHELCC_17275 EHELCC_17275 90.5 Morganella morganii S2 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
NLDBIP_17920 NLDBIP_17920 90.5 Morganella morganii S4 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
LHKJJB_17840 LHKJJB_17840 90.5 Morganella morganii S3 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
HKOGLL_17850 HKOGLL_17850 90.5 Morganella morganii S5 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
PMI_RS00390 PMI_RS00390 69.6 Proteus mirabilis HI4320 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

Distribution of the homologs in the orthogroup group_2256

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2256

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P25539 0.0 515 66 0 363 1 ribD Riboflavin biosynthesis protein RibD Escherichia coli (strain K12)
P44326 1.7e-140 406 53 3 367 3 ribD Riboflavin biosynthesis protein RibD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AB0 9.23e-129 377 46 1 364 3 ribD Riboflavin biosynthesis protein RibD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P17618 6.16e-99 300 43 4 369 1 ribD Riboflavin biosynthesis protein RibD Bacillus subtilis (strain 168)
P70814 1.46e-95 292 44 6 372 3 ribD Riboflavin biosynthesis protein RibD Bacillus amyloliquefaciens
O66534 8.91e-82 256 43 2 329 3 ribD Riboflavin biosynthesis protein RibD Aquifex aeolicus (strain VF5)
P50853 7.2e-79 249 39 6 382 3 ribD Riboflavin biosynthesis protein RibD Actinobacillus pleuropneumoniae
Q9Z735 8.03e-73 234 40 4 334 3 ribD Riboflavin biosynthesis protein RibD Chlamydia pneumoniae
O84735 1.22e-68 223 36 5 363 3 ribD Riboflavin biosynthesis protein RibD Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PLJ6 1e-64 213 36 5 363 3 ribD Riboflavin biosynthesis protein RibD Chlamydia muridarum (strain MoPn / Nigg)
Q55158 2.67e-63 209 37 5 345 3 ribD Riboflavin biosynthesis protein RibD Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8K9A4 6.67e-63 201 57 0 145 3 ribD1 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57533 8.83e-63 200 60 0 146 3 ribD1 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9A3 2.27e-61 199 43 0 211 3 ribD2 5-amino-6-(5-phosphoribosylamino)uracil reductase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P9WPH1 2.46e-60 201 38 10 369 1 ribD Riboflavin biosynthesis protein RibD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPH0 2.46e-60 201 38 10 369 3 ribD Riboflavin biosynthesis protein RibD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8GWP5 2.54e-51 179 52 0 157 1 PYRD Riboflavin biosynthesis protein PYRD, chloroplastic Arabidopsis thaliana
P57534 9.49e-48 164 40 0 204 3 ribD2 5-amino-6-(5-phosphoribosylamino)uracil reductase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
B6TRH4 1.09e-46 166 52 0 157 2 PYRD Riboflavin biosynthesis protein PYRD, chloroplastic Zea mays
O24750 1.45e-43 157 37 8 316 3 ribD Riboflavin biosynthesis protein RibD Corynebacterium ammoniagenes
Q9STY4 5.12e-34 135 29 9 379 1 PYRR Riboflavin biosynthesis protein PYRR, chloroplastic Arabidopsis thaliana
K7WIZ6 4.23e-32 130 30 9 352 1 PYRR Riboflavin biosynthesis protein PYRR, chloroplastic Zea mays
Q58085 2.71e-18 86 32 4 189 1 arfC 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O28272 2.29e-17 83 30 2 183 3 AF_2007 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O26337 5.36e-17 82 31 7 219 1 MTH_235 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P68397 3.37e-14 73 35 7 170 3 tadA tRNA-specific adenosine deaminase Shigella flexneri
P68398 3.37e-14 73 35 7 170 1 tadA tRNA-specific adenosine deaminase Escherichia coli (strain K12)
Q8FF24 6.2e-14 72 34 7 170 3 tadA tRNA-specific adenosine deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XA44 6.2e-14 72 34 7 170 3 tadA tRNA-specific adenosine deaminase Escherichia coli O157:H7
Q7CQ08 3.57e-12 67 35 6 153 3 tadA tRNA-specific adenosine deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XGY4 3.57e-12 67 35 6 153 3 tadA tRNA-specific adenosine deaminase Salmonella typhi
O66747 3.56e-10 62 27 5 217 1 ribD2 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Aquifex aeolicus (strain VF5)
P44931 7.24e-09 58 35 8 160 3 tadA tRNA-specific adenosine deaminase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P95872 9.61e-09 58 23 5 190 3 SSO2097 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
P21335 1.1e-08 57 32 5 154 1 tadA tRNA-specific adenosine deaminase Bacillus subtilis (strain 168)
P87241 2.3e-08 58 33 4 134 3 rib2 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q99W51 4.62e-08 55 29 5 158 1 tadA tRNA-specific adenosine deaminase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6FU96 5.2e-07 53 26 5 193 1 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
Q9P4B8 6.6e-07 53 25 6 190 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Kluyveromyces marxianus
Q89AM8 8.52e-07 52 28 7 156 3 tadA tRNA-specific adenosine deaminase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P33312 1.59e-06 52 25 7 221 1 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q6CJ61 3.55e-06 51 25 6 190 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
P68999 2.99e-05 47 35 3 85 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M1
P0DA21 3.13e-05 47 35 3 85 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M3 (strain SSI-1)
Q5XE14 3.13e-05 47 35 3 85 1 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DA20 3.13e-05 47 35 3 85 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q8P2R7 3.45e-05 47 35 3 85 3 tadA tRNA-specific adenosine deaminase Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q757H6 0.000148 46 26 7 193 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
Q12178 0.000596 43 31 6 129 1 FCY1 Cytosine deaminase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O94642 0.00062 45 35 3 82 1 tad2 tRNA-specific adenosine deaminase subunit tad2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P00814 0.000788 43 38 3 78 1 CD Deoxycytidylate deaminase Enterobacteria phage T2
P16006 0.001 43 38 3 78 1 CD Deoxycytidylate deaminase Enterobacteria phage T4

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16555
Feature type CDS
Gene ribD
Product bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
Location 130389 - 131498 (strand: -1)
Length 1110 (nucleotides) / 369 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2256
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region
PF01872 RibD C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0117 Coenzyme transport and metabolism (H) H Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors
Quorum sensing		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Protein Sequence

MQSDEFYMARALELAALGRFTTAPNPNVGCVIVRDGEIVGEGYHQRAGEAHAEVHALRMAGENARGATAYVTLEPCSHHGRTPPCAQALVNAGICRVVAAMQDPNPQVAGRGLYKLREAGIEVSHGVLMQEAEALNKGFFKLMRTGFPYIQLKMAASVDGKTALANGKSQWITSKAARQDVQQFRAQAGAILSTSATVLADDPGLTVRYDDFPAALQKAYPQEDIRQPVRIITDSRQRVTAQHRVTQLPGSCWLARTQSQPDEWQGNVEEIILPENGTGVDLVLLMMQLGKRGINTVWTECGSHLAGALLKAGLADEIVLYLAPKILGSGAQDLFTLPPLTHLRDAPEFRIDDVTQVGPDIRLRLIPVY

Flanking regions ( +/- flanking 50bp)

TATCCGTGAGTTTGGCGAAGAGATCGCGCGGTTACAGGACTGAAAATATGATGCAATCTGATGAGTTTTATATGGCGCGGGCGCTTGAATTAGCGGCGCTCGGGCGTTTTACCACGGCACCGAATCCGAATGTCGGGTGTGTGATTGTCCGCGATGGTGAGATTGTTGGCGAAGGGTATCATCAGCGTGCCGGAGAGGCACACGCAGAGGTGCATGCGCTGCGCATGGCGGGTGAAAACGCCCGTGGTGCGACCGCTTATGTCACACTGGAGCCGTGCAGTCATCACGGTCGTACGCCGCCGTGTGCCCAGGCTCTGGTTAATGCGGGCATTTGTCGTGTGGTGGCTGCCATGCAGGATCCGAATCCGCAGGTTGCCGGGCGCGGGCTGTATAAATTGCGTGAAGCCGGAATTGAGGTCAGTCACGGCGTATTGATGCAGGAAGCGGAAGCGCTGAACAAGGGCTTTTTTAAGCTGATGCGTACCGGTTTTCCGTATATTCAGCTGAAAATGGCGGCATCTGTTGACGGCAAAACGGCACTGGCAAATGGTAAGAGTCAGTGGATCACCTCGAAAGCCGCGCGGCAGGATGTGCAGCAGTTCCGCGCGCAGGCAGGGGCGATTCTGTCGACCAGCGCCACGGTACTGGCAGACGATCCCGGTCTGACGGTCCGTTATGATGATTTCCCTGCAGCATTACAAAAAGCGTATCCGCAGGAAGATATCCGCCAGCCGGTACGGATTATTACAGATAGTCGCCAGCGCGTAACAGCACAGCACCGCGTAACACAATTGCCGGGTAGTTGCTGGCTGGCGCGGACACAGTCTCAGCCGGATGAGTGGCAGGGTAATGTGGAAGAGATTATTCTGCCGGAGAACGGCACCGGGGTTGACCTCGTGCTGCTGATGATGCAACTCGGCAAGCGCGGTATTAATACTGTCTGGACAGAGTGCGGATCGCATCTGGCAGGGGCATTACTGAAAGCCGGGCTGGCAGATGAAATTGTATTATATCTGGCACCGAAAATTCTGGGCAGCGGTGCGCAGGATCTCTTTACCCTGCCGCCGCTCACCCATCTGCGGGATGCACCGGAGTTCAGAATTGACGATGTTACGCAGGTGGGACCGGATATCCGCCTGCGGTTGATCCCTGTATATTAATCACTGAATTTACGCCGGAATTTAATTTTTATACCGGAGTTTGAAAAACA