Homologs in group_399

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15800 FBDBKF_15800 87.4 Morganella morganii S1 yajL protein deglycase YajL
EHELCC_19650 EHELCC_19650 87.4 Morganella morganii S2 yajL protein deglycase YajL
NLDBIP_19625 NLDBIP_19625 87.4 Morganella morganii S4 yajL protein deglycase YajL
LHKJJB_19595 LHKJJB_19595 87.4 Morganella morganii S3 yajL protein deglycase YajL
HKOGLL_19505 HKOGLL_19505 87.4 Morganella morganii S5 yajL protein deglycase YajL
PMI_RS00480 PMI_RS00480 67.2 Proteus mirabilis HI4320 yajL protein deglycase YajL
PMI_RS10585 PMI_RS10585 26.3 Proteus mirabilis HI4320 - DJ-1/PfpI family protein

Distribution of the homologs in the orthogroup group_399

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_399

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q46948 3.55e-80 240 58 0 196 1 yajL Protein/nucleic acid deglycase 3 Escherichia coli (strain K12)
P55880 1.43e-73 223 57 0 196 3 yajL Protein/nucleic acid deglycase YajL Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9VA37 2.3e-37 130 39 4 192 1 dj-1beta Protein dj-1beta Drosophila melanogaster
Q7TQ35 5.45e-30 112 37 6 188 1 PARK7 Parkinson disease protein 7 homolog Mesocricetus auratus
Q5XJ36 8.83e-30 111 37 5 187 2 park7 Parkinson disease protein 7 homolog Danio rerio
Q9FPF0 4.2e-29 114 37 3 188 1 DJ1A Protein DJ-1 homolog A Arabidopsis thaliana
Q9FPF0 1.65e-21 94 33 2 156 1 DJ1A Protein DJ-1 homolog A Arabidopsis thaliana
Q8VY09 5.14e-29 115 38 5 194 2 DJ1C Protein DJ-1 homolog C Arabidopsis thaliana
Q8VY09 3.81e-20 90 33 3 184 2 DJ1C Protein DJ-1 homolog C Arabidopsis thaliana
Q9MAH3 6.27e-29 114 35 2 180 1 DJ1B Protein DJ-1 homolog B Arabidopsis thaliana
Q9MAH3 1.83e-28 113 36 3 186 1 DJ1B Protein DJ-1 homolog B Arabidopsis thaliana
Q99LX0 2.57e-28 107 37 6 188 1 Park7 Parkinson disease protein 7 homolog Mus musculus
Q95LI9 3.19e-28 107 38 6 188 2 PARK7 Parkinson disease protein 7 homolog Chlorocebus aethiops
Q5E946 3.26e-28 107 37 6 188 2 PARK7 Parkinson disease protein 7 homolog Bos taurus
Q99497 3.44e-28 107 38 6 188 1 PARK7 Parkinson disease protein 7 Homo sapiens
O88767 1.95e-27 105 37 6 188 1 Park7 Parkinson disease protein 7 homolog Rattus norvegicus
Q8UW59 9.72e-26 101 35 4 184 2 PARK7 Protein/nucleic acid deglycase DJ-1 Gallus gallus
P90994 2.16e-22 92 31 5 188 1 djr-1.1 Glutathione-independent glyoxalase DJR-1.1 Caenorhabditis elegans
A1Z9J4 2.65e-22 92 33 7 199 1 DJ-1alpha Protein DJ-1alpha Drosophila melanogaster
O16228 6.24e-21 88 32 6 165 1 djr-1.2 Glutathione-independent glyoxalase DJR-1.2 Caenorhabditis elegans
Q10356 2.22e-15 73 27 6 194 1 hsp3106 Glutathione-independent glyoxalase DJ-1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O59413 1.75e-13 68 31 5 158 1 PH1704 Deglycase PH1704 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9V1F8 7.04e-13 67 31 5 157 3 PYRAB04690 Deglycase PYRAB04690 Pyrococcus abyssi (strain GE5 / Orsay)
Q51732 3.55e-12 65 30 5 158 1 pfpI Deglycase PfpI Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q5JGM7 2.2e-09 57 29 5 158 3 TK1284 Deglycase TK1284 Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
O06006 3.08e-05 45 27 6 162 2 yraA Putative cysteine protease YraA Bacillus subtilis (strain 168)
Q8G9F9 3.92e-05 46 31 6 148 1 inhA Isonitrile hydratase Pseudomonas putida
Q8CRV8 7.05e-05 45 24 7 181 3 SE_1560 Uncharacterized protein SE_1560 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HN59 7.05e-05 45 24 7 181 3 SERP1413 Uncharacterized protein SERP1413 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q49WT1 0.000786 42 24 6 179 3 SSP1625 Uncharacterized protein SSP1625 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16510
Feature type CDS
Gene yajL
Product protein deglycase YajL
Location 120711 - 121307 (strand: 1)
Length 597 (nucleotides) / 198 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_399
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01965 DJ-1/PfpI family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0693 Defense mechanisms (V) V Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03152 protein deglycase [EC:3.5.1.124] - -

Protein Sequence

MPPSVLICLADGCEEIETVTTADLLIRAGIQVTLASANNDGGCLITGSRGIRLQADLPLVRVADEPFDAIVLPGGLKGAENLRDSPLVIEKIRRMQCEEKIVAAICAAPSVILVTHQLFPLGNMTGYPALQDKIPANQWINQRVYFDERVNLLTSQGPATAIDFALRLIERLCGQETAARVAGELVLPPGIWNYQDPT

Flanking regions ( +/- flanking 50bp)

GCCGGAAAACATTCACGTTTACAGCCTCGTAAAACAGAAAGAGGAACACAATGCCCCCTTCAGTTCTCATTTGTCTCGCTGACGGCTGCGAAGAAATTGAAACCGTCACCACGGCTGATTTACTCATCCGGGCTGGAATTCAGGTAACACTGGCCAGTGCCAATAATGATGGCGGTTGCCTTATCACCGGCTCACGGGGGATTCGCTTACAGGCAGACCTGCCGCTGGTGCGTGTTGCCGATGAGCCATTTGATGCCATTGTGCTGCCGGGCGGATTAAAAGGGGCGGAAAACCTGCGGGACAGCCCGCTGGTGATTGAAAAAATCCGCCGGATGCAGTGTGAAGAGAAAATTGTGGCGGCCATCTGTGCGGCACCCTCCGTTATCCTGGTGACTCACCAACTGTTTCCCCTCGGCAATATGACCGGCTACCCTGCATTACAGGATAAAATTCCTGCAAATCAGTGGATTAACCAACGCGTTTATTTTGATGAGCGGGTAAATCTGCTGACCAGCCAGGGACCTGCGACCGCGATTGATTTCGCGTTGCGCCTGATTGAGCGCCTGTGCGGACAGGAAACAGCGGCGCGTGTTGCCGGCGAACTGGTTCTGCCTCCGGGGATTTGGAACTATCAGGATCCTACTTAACCGATATCGGGTGATCACTGATTAAAATAACAAACGCCCGGCATTTATCC