Homologs in group_1082

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06150 FBDBKF_06150 82.6 Morganella morganii S1 recD exodeoxyribonuclease V subunit alpha
EHELCC_09195 EHELCC_09195 82.6 Morganella morganii S2 recD exodeoxyribonuclease V subunit alpha
NLDBIP_09575 NLDBIP_09575 82.6 Morganella morganii S4 recD exodeoxyribonuclease V subunit alpha
LHKJJB_08180 LHKJJB_08180 82.6 Morganella morganii S3 recD exodeoxyribonuclease V subunit alpha
HKOGLL_07730 HKOGLL_07730 82.6 Morganella morganii S5 recD exodeoxyribonuclease V subunit alpha
PMI_RS11415 PMI_RS11415 60.0 Proteus mirabilis HI4320 recD exodeoxyribonuclease V subunit alpha

Distribution of the homologs in the orthogroup group_1082

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1082

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04993 0.0 579 54 8 597 1 recD RecBCD enzyme subunit RecD Escherichia coli (strain K12)
Q89AB2 1.81e-116 363 31 10 610 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P45158 2.18e-107 340 39 10 533 3 recD RecBCD enzyme subunit RecD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57530 6.53e-95 306 30 7 595 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9A8 1.18e-87 287 29 8 599 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A0QS28 4.89e-64 223 38 16 524 3 recD RecBCD enzyme subunit RecD Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WHJ1 5.84e-61 215 37 18 511 1 recD RecBCD enzyme subunit RecD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHJ0 5.84e-61 215 37 18 511 3 recD RecBCD enzyme subunit RecD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O34481 1.25e-24 112 28 14 422 1 recD2 ATP-dependent RecD2 DNA helicase Bacillus subtilis (strain 168)
Q58914 6.25e-23 107 25 17 468 4 MJ1519 Uncharacterized protein MJ1519 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9RT63 4.15e-21 101 44 4 142 1 recD2 ATP-dependent RecD2 DNA helicase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9RT63 1.11e-14 81 31 4 172 1 recD2 ATP-dependent RecD2 DNA helicase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P32270 1.27e-07 58 28 4 156 1 dda ATP-dependent DNA helicase dda Enterobacteria phage T4
P55418 2.88e-05 51 30 5 181 3 traA Probable conjugal transfer protein TraA Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q44363 0.000107 49 30 12 271 3 traA Conjugal transfer protein TraA Rhizobium radiobacter

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15765
Feature type CDS
Gene recD
Product exodeoxyribonuclease V subunit alpha
Location 160576 - 162411 (strand: 1)
Length 1836 (nucleotides) / 611 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1082
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13245 AAA domain
PF13538 UvrD-like helicase C-terminal domain
PF21185 RecBCD enzyme subunit RecD, N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0507 Replication, recombination and repair (L) L ATPase/5’-3’ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] Homologous recombination -

Protein Sequence

MNAHLQTLCAEQVLRPLDCQFAAMLAEDDAPLLQLIFALLSMQTGAGHVCLPLSRIALLMEQGGRHAELLQSVWQALGEPSVAQIGSVLSVSDAVSDGSLPAPVVLSGTNLYLHRMWQYECQVAAYFSQPQPVTQDPESIRPLLDALFGSSMPETDWQKVAAAVAVSSRIAVISGGPGTGKTTTVARILAALVQSAPRQLLIELAAPTGKAAARLTESLGSAIEQLTLTDEQRAMMPEQAKTLHRLLGAQPDSRQLRHHHKNPLPLDILIIDEASMVDLPMMAVLIDALPPQARLILLGDKDQLASVEAGAVLGDICRFAKEGYTPERRMALEAMTGCILPETAPAHPVNVQDHLCLLRKSFRFDENSGIGQLAAAVNQGDARETMTILNGQRHDVRYVPLEDENGYPQVLTDTMTAYLPFLALVKKRAEPAVVLHAFNQFRLLCALREGPFGVEGLNERIERLLHQQGHIRRPLIHRLRGYHGKPVMINRNDSPLGLFNGDIGIMLRDDKNELRVHFQLPDGTIKSIQPSRLPAHETAYVMTVHKSQGSEFAHTALVLPVQISPLVSRELLYTALTRAKQFLTVYSREECLRRAVKTPTQRYSGLSERLR

Flanking regions ( +/- flanking 50bp)

CAGGTATTTACAGAACAGCTGGATGCGATGTTTAAAGGGGAGACAAGTAAATGAATGCTCACTTACAAACACTGTGTGCTGAACAGGTCCTGCGCCCTTTAGATTGTCAGTTCGCGGCTATGCTGGCAGAAGATGATGCGCCGCTGCTGCAATTAATTTTTGCACTGCTCAGTATGCAGACCGGCGCGGGGCATGTCTGTCTGCCGTTATCCCGCATTGCGTTGCTGATGGAGCAGGGCGGGCGGCACGCTGAATTATTACAGTCTGTCTGGCAGGCACTGGGTGAGCCGTCAGTTGCACAGATTGGATCTGTACTCAGCGTATCTGATGCAGTTAGTGATGGCTCACTTCCCGCACCTGTTGTGTTATCCGGCACTAATCTGTATCTGCACCGTATGTGGCAGTATGAATGTCAGGTGGCCGCGTATTTTTCACAGCCACAGCCGGTCACGCAGGACCCGGAAAGTATCCGCCCGTTACTGGATGCGCTGTTTGGTTCATCAATGCCGGAAACGGACTGGCAAAAAGTGGCAGCGGCAGTGGCGGTCAGCAGCAGGATTGCTGTTATCTCAGGCGGACCGGGAACCGGGAAAACGACAACGGTTGCCCGTATTCTGGCGGCACTGGTGCAATCTGCTCCCCGTCAGTTACTGATTGAACTGGCTGCCCCGACCGGCAAAGCGGCAGCGCGCCTGACTGAATCACTCGGTTCGGCAATTGAACAACTAACACTGACGGATGAGCAGCGCGCAATGATGCCGGAGCAGGCAAAAACCCTGCACCGTTTGCTGGGTGCACAGCCGGACAGCCGCCAGTTGCGCCATCATCATAAAAACCCGCTGCCGCTGGATATTCTGATTATTGATGAAGCATCCATGGTGGATTTACCGATGATGGCGGTACTGATCGACGCGTTGCCGCCGCAGGCAAGGCTGATTCTGCTGGGCGATAAAGACCAGCTCGCCTCTGTTGAAGCGGGGGCGGTTCTGGGGGATATCTGCCGTTTTGCCAAAGAGGGATATACGCCGGAAAGACGCATGGCTCTGGAAGCCATGACGGGCTGTATCCTGCCGGAAACGGCACCGGCTCACCCTGTAAATGTGCAGGATCACCTCTGTCTGCTGCGTAAAAGTTTCCGTTTTGATGAAAACTCCGGGATTGGTCAGCTGGCAGCCGCCGTAAACCAGGGGGATGCGCGGGAAACCATGACTATTCTGAACGGGCAGCGGCATGATGTCCGCTATGTACCGCTGGAGGATGAAAATGGCTATCCGCAGGTACTGACAGATACCATGACAGCTTATCTGCCGTTTCTTGCGCTGGTGAAAAAACGGGCAGAACCGGCGGTTGTTCTGCATGCCTTTAATCAGTTCCGGTTATTGTGTGCCCTGCGCGAAGGTCCGTTTGGCGTGGAAGGATTAAATGAGCGTATTGAACGGCTGTTGCATCAGCAGGGGCATATCCGGCGTCCCCTTATTCACCGGTTGCGCGGTTATCACGGAAAACCGGTGATGATCAACCGCAATGACAGCCCGCTCGGGCTGTTTAACGGGGATATCGGCATCATGCTCCGAGATGATAAAAATGAGCTTCGTGTGCATTTTCAGTTGCCGGACGGCACGATAAAAAGCATTCAGCCGAGCCGGTTACCGGCTCATGAAACGGCGTATGTGATGACAGTGCATAAATCCCAGGGATCTGAGTTTGCTCATACTGCGCTGGTGCTGCCGGTACAAATATCACCGCTGGTCAGCCGTGAGTTGCTGTATACCGCTCTGACGCGGGCAAAGCAGTTTCTGACCGTGTACAGCCGGGAAGAGTGTCTGCGCCGTGCGGTGAAAACCCCTACTCAGCGTTACAGCGGGCTGAGTGAGAGGTTACGATAAACAGCGATGACAGACAGCCGGTTATTTAAAATCCAGAATAAGAATCTTCG