Orthogroup:group_1082


Homologs in group_1082

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06150 FBDBKF_06150 Morganella morganii S1 recD exodeoxyribonuclease V subunit alpha
EHELCC_09195 EHELCC_09195 Morganella morganii S2 recD exodeoxyribonuclease V subunit alpha
NLDBIP_09575 NLDBIP_09575 Morganella morganii S4 recD exodeoxyribonuclease V subunit alpha
LHKJJB_08180 LHKJJB_08180 Morganella morganii S3 recD exodeoxyribonuclease V subunit alpha
HKOGLL_07730 HKOGLL_07730 Morganella morganii S5 recD exodeoxyribonuclease V subunit alpha
F4V73_RS15765 F4V73_RS15765 Morganella psychrotolerans recD exodeoxyribonuclease V subunit alpha
PMI_RS11415 PMI_RS11415 Proteus mirabilis HI4320 recD exodeoxyribonuclease V subunit alpha

Distribution of group_1082 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1082 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1082

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1082.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 recD 7

Product

# Product Occurence
1 exodeoxyribonuclease V subunit alpha 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0507 7 L Replication, recombination and repair (L) ATPase/5’-3’ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03581 7 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] Homologous recombination -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13245 7 AAA domain
PF13538 7 UvrD-like helicase C-terminal domain
PF21185 7 RecBCD enzyme subunit RecD, N-terminal domain

Annotations of the 15 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase dda 1
ATP-dependent RecD2 DNA helicase 2
Conjugal transfer protein TraA 2
Probable conjugal transfer protein TraA 1
RecBCD enzyme subunit RecD 8
Uncharacterized protein MJ1519 1

Protein length

Min length 610
Max length 638
Mean length (sd) 614.1 (10.5)
Median length 610.0

Protein length distribution