Homologs in group_1087

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06180 FBDBKF_06180 70.8 Morganella morganii S1 pulJ prepilin peptidase-dependent protein
EHELCC_09225 EHELCC_09225 70.8 Morganella morganii S2 pulJ prepilin peptidase-dependent protein
NLDBIP_09605 NLDBIP_09605 70.8 Morganella morganii S4 pulJ prepilin peptidase-dependent protein
LHKJJB_08150 LHKJJB_08150 70.8 Morganella morganii S3 pulJ prepilin peptidase-dependent protein
HKOGLL_07700 HKOGLL_07700 70.8 Morganella morganii S5 pulJ prepilin peptidase-dependent protein
PMI_RS11445 PMI_RS11445 33.9 Proteus mirabilis HI4320 - prepilin peptidase-dependent protein

Distribution of the homologs in the orthogroup group_1087

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1087

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08371 9.5e-31 114 35 1 154 3 ppdB Prepilin peptidase-dependent protein B Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15735
Feature type CDS
Gene -
Product prepilin peptidase-dependent protein
Location 149277 - 149858 (strand: 1)
Length 582 (nucleotides) / 193 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1087
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4795 Intracellular trafficking, secretion, and vesicular transport (U) U Type II secretory pathway, PulJ/GspJ component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02680 prepilin peptidase dependent protein B - -

Protein Sequence

MTLSSRGSLLLEMLVSMAVSAILLVTITRFFPVLCRDVTNTYRQYKLDNIMRETLLRLEKDLRRTGFCRGTCQGRPLQIAAKKGEPANSCVIVAYDLNHNSRWERNTRKTGEHFGYRLNKNALEWSRNALSCQEPGWEKVTDNRQIVVTRFSVTPVSLHQQSGLQLSLTLAGKEKPVLQRTGESLIATPNYHP

Flanking regions ( +/- flanking 50bp)

ATCCGGTTATGTACCCCGGGGCAGTTGTCCGGTATCCCGGCGTGTTGATAATGACTTTGTCATCAAGAGGCTCTCTTCTACTTGAGATGCTGGTCAGTATGGCTGTCAGTGCCATATTGCTGGTGACGATTACCCGGTTTTTTCCGGTTCTCTGCCGGGATGTAACGAATACATACCGGCAATATAAACTGGATAATATTATGCGCGAGACACTGTTACGGCTGGAAAAAGATCTCCGGCGGACAGGCTTTTGCCGGGGAACCTGTCAGGGCAGACCATTACAGATAGCGGCAAAAAAAGGAGAACCTGCAAACAGTTGCGTTATCGTCGCTTATGATCTTAACCATAACAGCCGCTGGGAGCGCAATACACGAAAAACCGGCGAGCATTTCGGGTATCGCCTGAACAAAAATGCACTGGAATGGAGCCGCAATGCGCTGAGCTGCCAGGAGCCCGGATGGGAAAAAGTGACAGATAACCGGCAGATTGTGGTGACGCGTTTTTCCGTTACGCCGGTCAGCCTTCATCAGCAAAGTGGTTTACAGTTATCATTAACACTGGCCGGCAAAGAAAAACCGGTGCTGCAACGAACCGGAGAAAGCCTGATTGCAACACCCAATTATCATCCGTAACAGTGTGGGTCGGCGCGAAAAAACAATGCAGGGCAGTGCGCTGATGATGA