COG4795


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4795, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type II secretory pathway, PulJ/GspJ component
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4795 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1087 FBDBKF_06180 64294 64881 -1 pulJ prepilin peptidase-dependent protein Morganella morganii S1
1 group_1087 EHELCC_09225 64866 65453 -1 pulJ prepilin peptidase-dependent protein Morganella morganii S2
2 group_1087 NLDBIP_09605 64866 65453 -1 pulJ prepilin peptidase-dependent protein Morganella morganii S4
3 group_1087 LHKJJB_08150 151785 152372 1 pulJ prepilin peptidase-dependent protein Morganella morganii S3
4 group_1087 HKOGLL_07700 151785 152372 1 pulJ prepilin peptidase-dependent protein Morganella morganii S5
5 group_1087 F4V73_RS15735 149277 149858 1 prepilin peptidase-dependent protein Morganella psychrotolerans
6 group_1087 PMI_RS11445 2522437 2523075 -1 prepilin peptidase-dependent protein Proteus mirabilis HI4320