Homologs in group_1152

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06600 FBDBKF_06600 95.9 Morganella morganii S1 radA DNA repair protein RadA
EHELCC_09645 EHELCC_09645 95.9 Morganella morganii S2 radA DNA repair protein RadA
NLDBIP_10025 NLDBIP_10025 95.9 Morganella morganii S4 radA DNA repair protein RadA
LHKJJB_07730 LHKJJB_07730 95.9 Morganella morganii S3 radA DNA repair protein RadA
HKOGLL_07280 HKOGLL_07280 95.9 Morganella morganii S5 radA DNA repair protein RadA
PMI_RS12385 PMI_RS12385 89.8 Proteus mirabilis HI4320 radA DNA repair protein RadA

Distribution of the homologs in the orthogroup group_1152

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1152

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24517 0.0 866 89 1 462 3 radA DNA repair protein RadA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P24554 0.0 862 88 1 462 1 radA DNA repair protein RadA Escherichia coli (strain K12)
P45266 0.0 748 78 2 462 3 radA DNA repair protein RadA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P96963 0.0 598 62 3 461 3 radA DNA repair protein RadA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P37572 1.4e-144 424 48 7 462 1 radA DNA repair protein RadA Bacillus subtilis (strain 168)
Q9KGG1 3.92e-144 422 46 5 460 3 radA DNA repair protein RadA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q92F42 2.4e-134 398 45 6 460 3 radA DNA repair protein RadA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q48761 4.87e-134 397 45 6 460 3 radA DNA repair protein RadA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P74391 5.14e-125 375 42 5 480 3 radA DNA repair protein RadA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O66827 1.03e-124 373 42 4 454 3 radA DNA repair protein RadA Aquifex aeolicus (strain VF5)
Q1RJR7 3.65e-122 366 44 4 428 3 radA DNA repair protein RadA Rickettsia bellii (strain RML369-C)
O84300 3.29e-121 364 41 3 463 3 radA DNA repair protein RadA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q4UL56 1.66e-120 362 43 5 432 3 radA DNA repair protein RadA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92HG1 3.87e-120 361 43 4 433 3 radA DNA repair protein RadA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9A1K1 4.56e-119 358 42 5 446 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M1
Q8P2Q5 4.97e-119 358 42 5 446 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5XDZ7 4.97e-119 358 42 5 446 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DD79 1.99e-118 357 42 5 446 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DD78 1.99e-118 357 42 5 446 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q2YMH5 1.91e-117 355 42 5 446 3 radA DNA repair protein RadA Brucella abortus (strain 2308)
Q9PN90 1.16e-116 352 42 7 458 3 radA DNA repair protein RadA Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q68WI9 4.21e-114 345 42 5 429 3 radA DNA repair protein RadA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9PK96 2.07e-113 344 41 4 458 3 radA DNA repair protein RadA Chlamydia muridarum (strain MoPn / Nigg)
Q8DRP0 4e-113 342 44 2 402 1 radA DNA repair protein RadA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q9ZD04 1.12e-112 342 42 4 428 3 radA DNA repair protein RadA Rickettsia prowazekii (strain Madrid E)
Q9ZMK9 1.56e-112 342 41 5 428 3 radA DNA repair protein RadA Helicobacter pylori (strain J99 / ATCC 700824)
Q9Z9C8 2.87e-112 341 41 3 463 3 radA DNA repair protein RadA Chlamydia pneumoniae
P56148 9.1e-112 340 41 5 428 3 radA DNA repair protein RadA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9RVC4 1.63e-106 328 45 5 428 3 radA DNA repair protein RadA Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
O83985 6.91e-97 301 39 8 453 3 radA DNA repair protein RadA Treponema pallidum (strain Nichols)
A0R563 7.7e-96 299 36 5 459 1 radA DNA repair protein RadA Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WHJ9 2.64e-94 296 37 4 429 1 radA DNA repair protein RadA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHJ8 2.64e-94 296 37 4 429 3 radA DNA repair protein RadA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65954 2.64e-94 296 37 4 429 3 radA DNA repair protein RadA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O28184 2.65e-07 54 25 6 202 3 radB DNA repair and recombination protein RadB Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A3CXI2 6.46e-07 53 27 10 231 3 radB DNA repair and recombination protein RadB Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
P42425 7.93e-07 55 28 3 136 1 lon2 Lon protease 2 Bacillus subtilis (strain 168)
P81415 3.2e-06 51 23 6 230 1 radB DNA repair and recombination protein RadB Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P57549 4.22e-06 53 29 2 108 3 lon Lon protease Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P95547 7.74e-06 50 25 8 227 1 radB DNA repair and recombination protein RadB Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
O29883 1.3e-05 51 25 3 154 1 AF_0364 Archaeal Lon protease Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q8NKS6 3.06e-05 50 29 1 92 1 lon Archaeal Lon protease Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q9XW87 5.42e-05 49 31 1 82 3 lonp-2 Lon protease homolog 2, peroxisomal Caenorhabditis elegans
P0CQ16 8.07e-05 48 31 1 98 3 PIM1 Lon protease homolog, mitochondrial Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
P0CQ17 8.28e-05 48 31 1 98 3 PIM1 Lon protease homolog, mitochondrial Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)
P46067 8.84e-05 48 27 2 108 2 lon Lon protease Erwinia amylovora
B6YXT4 9.42e-05 47 26 9 227 3 radB DNA repair and recombination protein RadB Thermococcus onnurineus (strain NA1)
Q58812 0.000104 48 24 2 113 1 MJ1417 Archaeal Lon protease Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
B8BDV1 0.000149 48 28 2 109 2 LON1 Lon protease homolog 2, peroxisomal Oryza sativa subsp. indica
P74956 0.000152 48 29 2 108 3 lon Lon protease Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q0J032 0.000155 48 28 2 109 2 Os09g0533400 Lon protease homolog 2, peroxisomal Oryza sativa subsp. japonica
O57859 0.000174 46 25 10 226 3 radB DNA repair and recombination protein RadB Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P0A9M0 0.000201 47 27 2 108 1 lon Lon protease Escherichia coli (strain K12)
P0A9M1 0.000201 47 27 2 108 3 lon Lon protease Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8K988 0.000274 47 25 2 108 3 lon Lon protease Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A9B3R2 0.000294 47 27 2 114 3 lon2 Lon protease 2 Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95)
P93647 0.000333 47 28 2 109 2 LON1 Lon protease homolog 2, peroxisomal Zea mays
A8F811 0.000352 47 30 1 83 3 lon Lon protease Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO)
Q99133 0.000371 46 29 8 193 3 RAD51 DNA repair protein RAD51 Ustilago maydis (strain 521 / FGSC 9021)
B2V6N0 0.000376 47 34 1 78 3 lon Lon protease Sulfurihydrogenibium sp. (strain YO3AOP1)
Q9HJD3 0.000401 45 22 9 227 3 radB DNA repair and recombination protein RadB Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q27297 0.000558 45 27 7 173 1 spn-A DNA repair protein Rad51 homolog Drosophila melanogaster
Q6BJJ8 0.000569 46 27 2 110 3 DEHA2G01892g Lon protease homolog 2, peroxisomal Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
A1U2E3 0.000606 45 31 4 138 3 recA Protein RecA Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)
Q5H432 0.000625 46 28 2 111 3 lon Lon protease Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
P36601 0.000672 45 28 9 216 1 rhp51 DNA repair protein rhp51 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
B8EMF2 0.000715 45 27 2 106 3 lon Lon protease Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2)
Q9UYC6 0.000817 45 28 1 92 3 lon Archaeal Lon protease Pyrococcus abyssi (strain GE5 / Orsay)
P73860 0.000879 45 23 10 217 1 kaiC2 Circadian clock protein KaiC2 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A8HYF7 0.001 45 26 2 106 3 lon Lon protease Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
B0TZA7 0.001 45 28 3 108 3 lon Lon protease Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / CCUG 19701 / FSC 153 / O#319-036)
Q6MTF4 0.001 45 24 3 122 3 lon Lon protease Mycoplasma mycoides subsp. mycoides SC (strain CCUG 32753 / NCTC 10114 / PG1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15345
Feature type CDS
Gene radA
Product DNA repair protein RadA
Location 52540 - 53931 (strand: 1)
Length 1392 (nucleotides) / 463 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1152
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13481 AAA domain
PF13541 Subunit ChlI of Mg-chelatase
PF18073 Rubredoxin metal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1066 Replication, recombination and repair (L) L DNA repair protein RadA/Sms, contains AAA+ ATPase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04485 DNA repair protein RadA/Sms - -

Protein Sequence

MAKPAKRAFVCNECGADYPRWQGQCTACQAWNTITEIRLAAASSSSAARAERLSGYAGQGGISKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTMCQLASQMKTLYITGEESLQQVAMRAHRLALPMDNLNMLSETAIEQICLIADQEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCSVMLDGESDSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRNRPIPRDVVIFGEVGLAGEIRPVPSGQERIAEAAKHGFKRAIVPGANCPKNPPAGMQVFGVKKLADALSVLDELE

Flanking regions ( +/- flanking 50bp)

CGGGCTGAAACACGAAGAACGTTAATTAATCAGTTATTACGGGGTCACGAGTGGCAAAACCAGCAAAACGCGCCTTTGTCTGTAATGAATGCGGGGCAGATTATCCCCGCTGGCAGGGGCAGTGCACCGCGTGTCAGGCGTGGAATACTATCACAGAAATCCGGCTGGCGGCCGCGTCGTCGTCTTCTGCGGCGCGGGCAGAGCGCCTCAGTGGTTATGCGGGGCAGGGCGGGATCAGTAAAGTTCAGAAGCTGTCTGACATCAGCCTGGAAGAGTTGCCGCGTTTCTCAACCGGCTTCAAAGAATTTGACCGCGTACTGGGCGGTGGTGTGGTGCCCGGCAGTGCGATTCTGATCGGCGGGAACCCCGGTGCCGGAAAAAGTACCCTGCTGTTACAGACCATGTGCCAGCTCGCCTCACAAATGAAAACCCTGTATATCACCGGGGAAGAGTCCTTACAGCAGGTCGCCATGCGCGCGCATCGTCTCGCGCTGCCGATGGACAATCTCAATATGCTGTCAGAAACAGCGATTGAACAAATTTGCCTGATTGCAGACCAGGAACAGCCTAAGCTGATGGTGATCGACTCCATTCAGGTGATGCACATGGCAGATATCCAGTCGTCACCCGGCAGTGTGGCGCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTTGCCAAAACCCGGGGTGTGGCGATTATCATGGTGGGTCATGTGACCAAAGACGGTTCACTGGCGGGACCTAAAGTGCTGGAGCACTGTATTGACTGCTCGGTGATGCTCGACGGTGAGTCAGATTCACGTTTTCGCACATTGCGCAGCCACAAAAACCGCTTTGGTGCGGTGAATGAGCTGGGTGTTTTTGCGATGACTGAACAGGGGCTGCGTGAGGTGAGTAATCCCTCCGCCATTTTCCTGAGCCGGGGCGATGAAATTACTTCCGGCAGCTCGGTGATGGTGGTCTGGGAAGGAACACGTCCGCTGCTGGTGGAAATTCAGGCGCTGGTGGATCACTCGATGATGTCAAACCCGCGCCGCGTGGCTGTGGGTCTGGAGCAAAACCGGCTGGCTATCCTGCTGGCGGTATTACACCGCCACGGCGGGTTGCAGATGTCTGATCAGGATGTCTTCGTCAATGTGGTCGGTGGGGTGAAAGTAACAGAAACCAGTGCGGATCTGGCATTGCTGCTCTCGCTGGTGTCAAGTTTTCGCAATCGTCCTATCCCGCGGGATGTGGTCATTTTCGGGGAAGTCGGGCTGGCAGGGGAAATCCGACCGGTGCCGAGCGGACAGGAACGTATTGCTGAAGCCGCCAAACACGGGTTTAAACGGGCGATTGTGCCGGGCGCCAACTGCCCGAAAAACCCGCCTGCGGGCATGCAGGTCTTCGGCGTGAAAAAACTGGCAGATGCATTATCCGTTCTGGATGAGCTGGAATAGAGAGGCGTGAATGACTGATTTTTCCTATCTGAAGCACGCCATTAAACAGG