Homologs in group_2323

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17850 FBDBKF_17850 84.9 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_09875 EHELCC_09875 84.9 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_10255 NLDBIP_10255 84.9 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_07500 LHKJJB_07500 84.9 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_07050 HKOGLL_07050 84.9 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
PMI_RS17745 PMI_RS17745 55.7 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2323

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2323

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DUU5 1.15e-45 159 37 2 244 1 aceR HTH-type transcriptional regulator AceR Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
Q9I4X0 5.13e-18 86 28 6 260 1 mvfR Multiple virulence factor regulator MvfR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q4G384 6.06e-15 77 27 3 263 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
Q85G62 1.02e-12 70 25 5 244 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
Q3MCB5 1.92e-12 70 25 5 264 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
P48271 4.02e-12 68 25 6 274 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
Q8YQ82 4.32e-12 68 25 5 264 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
O68014 7.73e-12 68 26 5 245 1 benM HTH-type transcriptional regulator BenM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P73123 3.97e-11 66 23 3 281 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O78432 4.11e-11 65 23 4 291 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
P76369 4.32e-11 65 26 8 251 3 yeeY Uncharacterized HTH-type transcriptional regulator YeeY Escherichia coli (strain K12)
P0ACR2 6.29e-11 65 23 4 266 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli (strain K12)
P0ACR3 6.29e-11 65 23 4 266 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli O157:H7
P52693 7.13e-11 65 28 4 205 3 ntcB Probable nitrogen assimilation transcriptional activator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q765S2 7.14e-11 65 26 6 271 3 allS HTH-type transcriptional activator AllS Klebsiella pneumoniae
P51205 1.38e-10 64 23 3 270 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
Q1XDT2 3.62e-10 63 23 3 261 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
A2CI69 5.96e-10 62 26 2 194 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
P70785 1.08e-09 61 26 9 304 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
Q6B936 1.14e-09 61 25 6 274 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
Q8FK66 4.76e-09 60 26 8 270 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 4.76e-09 60 26 8 270 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1RF30 5.79e-09 59 26 8 270 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 5.79e-09 59 26 8 270 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
P0ACR0 6.65e-09 59 26 8 268 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 6.65e-09 59 26 8 268 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
P20668 9.58e-09 58 26 8 250 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
P52696 9.71e-09 58 23 3 239 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P27111 1.19e-08 58 25 2 204 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
Q8X4M5 1.43e-08 58 26 4 225 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
O34701 2.4e-08 57 25 10 272 3 yoaU Uncharacterized HTH-type transcriptional regulator YoaU Bacillus subtilis (strain 168)
P07774 2.85e-08 57 26 5 245 1 catM HTH-type transcriptional regulator CatM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P30864 3.36e-08 57 30 4 155 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q9S4Y7 3.49e-08 57 26 7 264 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 3.49e-08 57 26 7 264 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A0T0V5 3.67e-08 57 21 4 273 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
Q8KA72 3.69e-08 57 30 6 180 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q57S50 5.08e-08 57 26 7 264 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
O32255 5.1e-08 56 21 8 292 3 yvbU Uncharacterized HTH-type transcriptional regulator YvbU Bacillus subtilis (strain 168)
P52662 8.06e-08 56 29 2 144 3 pecT HTH-type transcriptional regulator PecT Dickeya dadantii (strain 3937)
O19892 8.24e-08 56 26 3 199 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
Q8Z8R3 8.45e-08 56 26 7 264 3 allS HTH-type transcriptional activator AllS Salmonella typhi
P77700 1.06e-07 55 26 6 210 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)
P25544 1.48e-07 55 28 2 150 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
P94501 2.32e-07 54 26 6 253 1 gltR HTH-type transcriptional regulator GltR Bacillus subtilis (strain 168)
P94403 2.81e-07 54 30 3 143 3 bsdA HTH-type transcriptional regulator BsdA Bacillus subtilis (strain 168)
P55181 3.37e-07 54 26 8 291 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
P49518 4.52e-07 53 20 5 281 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
P0ACR4 1.01e-06 52 24 7 266 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 1.01e-06 52 24 7 266 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 1.01e-06 52 24 7 266 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
P96725 1.7e-06 52 23 6 264 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
P77309 2.45e-06 51 28 6 158 3 yneJ Uncharacterized HTH-type transcriptional regulator YneJ Escherichia coli (strain K12)
P67660 4.42e-06 50 24 9 275 1 yhaJ Probable HTH-type transcriptional regulator YhaJ Escherichia coli (strain K12)
P67661 4.42e-06 50 24 9 275 1 yhaJ HTH-type transcriptional regulator YhaJ Escherichia coli O157:H7
P96194 5.37e-06 48 46 0 67 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
P0ACR8 5.51e-06 50 26 3 160 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Shigella flexneri
P0ACR7 5.51e-06 50 26 3 160 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Escherichia coli (strain K12)
P0A9G1 6.06e-06 50 24 5 235 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 6.06e-06 50 24 5 235 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 6.06e-06 50 24 5 235 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
O06703 6.63e-06 50 26 0 148 3 bbuR HTH-type transcriptional regulator BbuR Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
P44821 6.68e-06 50 27 1 147 3 ilvY HTH-type transcriptional activator IlvY Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52661 1.03e-05 50 24 1 192 1 gbpR HTH-type transcriptional regulator GbpR Azospirillum brasilense
P39127 1.18e-05 49 24 7 263 3 citR HTH-type transcriptional regulator CitR Bacillus subtilis (strain 168)
Q9JXW7 1.23e-05 49 31 2 132 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P39592 1.42e-05 49 23 5 247 3 ywbI Uncharacterized HTH-type transcriptional regulator YwbI Bacillus subtilis (strain 168)
A7Z5E4 2.19e-05 48 24 6 254 3 yofA HTH-type transcriptional regulator YofA Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)
P0A2Q4 2.48e-05 48 23 5 249 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 2.48e-05 48 23 5 249 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
Q9JPU9 2.7e-05 48 31 2 132 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
O87883 3.33e-05 47 26 0 145 3 oxyR Probable hydrogen peroxide-inducible genes activator (Fragment) Mycobacterium xenopi
P52691 3.78e-05 48 25 9 248 3 lrrA Probable HTH-type transcriptional regulator LrrA Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52677 4.04e-05 48 23 6 285 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium avium
P52678 4.51e-05 47 26 0 145 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium leprae (strain TN)
O34685 5.64e-05 47 23 5 245 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P45099 8.46e-05 47 31 8 215 3 gcvA Glycine cleavage system transcriptional activator homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q04778 9.12e-05 47 22 5 248 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
P0DV33 0.00011 46 31 0 92 1 admX HTH-type transcriptional regulator AdmX Serratia plymuthica
P55576 0.000121 46 36 6 120 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P13041 0.000196 45 32 1 90 1 mkaC Virulence genes transcriptional activator Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P94387 0.000197 45 27 6 145 3 ycgK Uncharacterized HTH-type transcriptional regulator YcgK Bacillus subtilis (strain 168)
A5F9F9 0.000249 45 23 5 243 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P0C6D1 0.000277 45 23 5 243 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P42722 0.000312 45 30 4 152 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q08597 0.000333 45 22 3 166 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
Q9X725 0.000362 45 23 0 142 3 oxyR Hydrogen peroxide-inducible genes activator Dickeya chrysanthemi
P24417 0.000362 45 32 1 90 3 spvR Virulence genes transcriptional activator SpvR Salmonella dublin
Q47005 0.000378 45 29 0 93 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)
P52669 0.000384 45 24 5 182 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
P71318 0.000453 44 23 0 142 3 oxyR Hydrogen peroxide-inducible genes activator Pectobacterium carotovorum subsp. carotovorum
O87324 0.000478 44 23 6 257 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium marinum
Q1R6S1 0.000566 44 27 1 122 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain UTI89 / UPEC)
P45463 0.000566 44 27 1 122 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain K12)
Q8FDH0 0.000566 44 27 1 122 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACQ4 0.000578 44 26 1 145 1 oxyR DNA-binding transcriptional dual regulator OxyR Escherichia coli (strain K12)
P0ACQ5 0.000578 44 26 1 145 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACQ6 0.000578 44 26 1 145 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O157:H7
Q0TD46 0.000581 44 27 1 122 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P52689 0.000623 44 26 0 114 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
Q8XBK9 0.000648 44 27 1 122 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O157:H7
P14145 0.000702 44 27 3 145 3 ampR HTH-type transcriptional activator AmpR Rhodobacter capsulatus
Q6HPH4 0.000719 44 36 1 77 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis subsp. konkukian (strain 97-27)
P12529 0.00081 43 28 1 115 1 ampR HTH-type transcriptional activator AmpR Citrobacter freundii
P58332 0.000879 43 24 7 273 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
Q63H01 0.000886 43 36 1 77 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ZK / E33L)
Q73EY2 0.000886 43 36 1 77 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 10987 / NRS 248)
Q81VJ1 0.001 43 34 0 75 3 czcR HTH-type transcriptional regulator CzcR Bacillus anthracis
P46068 0.001 43 31 4 145 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
B1JQ39 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66G51 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TRF4 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis (strain Pestoides F)
Q1CNN4 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis bv. Antiqua (strain Nepal516)
A9R8E7 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZAA7 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis
B2JZG4 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1CBT5 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis bv. Antiqua (strain Antiqua)
A7FD20 0.001 43 28 4 164 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15115
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 4263 - 5159 (strand: 1)
Length 897 (nucleotides) / 298 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2323
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MPFTSDNLQLFLTVLEKGSFSAAARALHRVPSAVSMAIGNLEAELGFALFDRDGRAPVPTENAVALAPYAKEITDKLHQLNVFTRELTQGVESTLAIGVATDVNPQCLFAALQILNQRYPLMKTELLSAPQDDILPLLHQGRIQLALVFGGLYVDPREQFHCIGHESLVATISASHPSLSLQPSVYIEDLVQTRQVIIASHHHTLSDIRTQVATKTWQTDNFAMALGLVKAGIGWGNLPESLIQTELAAGTLRVLSFRNTRNGLVLPVHIVSLKGDVLKRGAQDCIGLLTESHVCPGN

Flanking regions ( +/- flanking 50bp)

ATGATAAATAAAGTCAGCTACTATCAGTTTTTCTGACAGAGGGAGGGCGTATGCCTTTTACCAGTGATAATTTACAGCTCTTTCTTACCGTGCTTGAGAAGGGATCGTTTTCAGCGGCAGCACGGGCATTGCACCGGGTGCCTTCTGCGGTCAGTATGGCTATCGGTAATCTGGAAGCTGAGCTGGGATTTGCGCTATTTGACCGGGATGGCAGGGCGCCGGTGCCGACAGAAAATGCGGTCGCACTCGCACCTTATGCAAAAGAAATTACAGATAAACTTCATCAGTTGAATGTGTTTACCCGCGAACTGACGCAGGGAGTGGAGAGCACGCTCGCCATTGGTGTGGCAACGGATGTGAACCCGCAGTGTTTGTTTGCGGCACTGCAAATACTTAATCAGCGCTACCCTCTGATGAAAACAGAGCTTCTCTCTGCTCCGCAGGATGATATTTTGCCTTTGTTGCATCAGGGGCGTATTCAGCTGGCATTGGTGTTTGGCGGATTATATGTGGATCCGCGCGAGCAGTTCCACTGTATCGGTCATGAATCTCTTGTGGCAACAATTTCAGCCTCTCATCCGTCGCTTTCTTTACAGCCATCTGTTTATATTGAAGATTTGGTGCAAACCCGGCAGGTTATTATTGCCAGTCATCATCATACTCTCAGTGATATCAGAACTCAGGTTGCGACAAAAACCTGGCAGACAGATAACTTTGCGATGGCGCTCGGGTTGGTAAAGGCAGGGATCGGTTGGGGTAATTTGCCTGAATCGTTGATTCAGACAGAACTGGCGGCAGGCACACTGCGGGTGCTGTCATTCCGCAATACCCGTAACGGGCTGGTGCTTCCGGTACATATTGTCAGCCTGAAAGGGGACGTGCTTAAACGCGGTGCACAAGATTGCATCGGGTTGCTGACGGAAAGCCATGTGTGTCCGGGAAATTAGTTGCTATGATAATAAGATAAATCAGCCCACAGGAGCACATATGTTTGAAA