Homologs in group_1696

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11835 FBDBKF_11835 93.5 Morganella morganii S1 prkB phosphoribulokinase
EHELCC_14470 EHELCC_14470 93.5 Morganella morganii S2 prkB phosphoribulokinase
NLDBIP_15565 NLDBIP_15565 93.5 Morganella morganii S4 prkB phosphoribulokinase
LHKJJB_15045 LHKJJB_15045 93.5 Morganella morganii S3 prkB phosphoribulokinase
HKOGLL_14165 HKOGLL_14165 93.5 Morganella morganii S5 prkB phosphoribulokinase
PMI_RS13920 PMI_RS13920 80.3 Proteus mirabilis HI4320 - phosphoribulokinase

Distribution of the homologs in the orthogroup group_1696

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1696

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEX6 4.11e-174 485 79 0 288 3 prkB Probable phosphoribulokinase Shigella flexneri
P0AEX5 4.11e-174 485 79 0 288 3 prkB Probable phosphoribulokinase Escherichia coli (strain K12)
P19924 2.04e-120 349 57 1 288 1 cfxP Phosphoribulokinase, plasmid Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P19923 1.36e-117 342 56 1 288 1 cfxP Phosphoribulokinase, chromosomal Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P37100 9.33e-111 325 53 1 288 3 cbbP Phosphoribulokinase Nitrobacter vulgaris
P56887 1.51e-107 317 53 1 287 3 cbbP Phosphoribulokinase Sinorhizobium medicae (strain WSM419)
P23015 9.92e-107 315 53 1 288 3 cbbP Phosphoribulokinase Xanthobacter flavus
P58347 4.38e-105 310 52 1 287 3 cbbP Phosphoribulokinase Rhizobium meliloti (strain 1021)
P12033 1.12e-103 306 51 1 289 1 prkA Phosphoribulokinase 1 Cereibacter sphaeroides
P23010 4.24e-101 300 50 1 285 3 prkB Phosphoribulokinase 2 Cereibacter sphaeroides
P19824 9.53e-08 56 24 9 259 1 PRKA Phosphoribulokinase, chloroplastic Chlamydomonas reinhardtii
P09559 2.72e-07 55 23 8 240 1 None Phosphoribulokinase, chloroplastic Spinacia oleracea
P37101 3.33e-07 54 26 8 206 2 prk Phosphoribulokinase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P27774 2.47e-05 48 22 8 267 2 None Phosphoribulokinase, chloroplastic Mesembryanthemum crystallinum
P26302 3.48e-05 48 22 5 211 2 None Phosphoribulokinase, chloroplastic Triticum aestivum
P25697 4.38e-05 48 23 11 272 1 At1g32060 Phosphoribulokinase, chloroplastic Arabidopsis thaliana
C0ZAS6 0.000248 45 26 9 196 3 udk Uridine kinase Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14815
Feature type CDS
Gene -
Product phosphoribulokinase
Location 198873 - 199748 (strand: -1)
Length 876 (nucleotides) / 291 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1696
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00485 Phosphoribulokinase / Uridine kinase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3954 Carbohydrate transport and metabolism (G) G Phosphoribulokinase

Kegg Ortholog Annotation(s)

Protein Sequence

MSRTHPIIAVTGSSGAGTTTTSQAFRKIFQQLSATPATLEGDSFHRYTRPEMDAAIRKAREQGRYISYFGPEANDFGLLETAFRQYGENGSGERRRYLHTYDEAVPYNQLPGTFTPREPLPENTDVLFYEGLHGGVVTPDHKIAGHVDLLVGVVPIVNLEWIQKLVRDTSDRGHSREAVMDSVVRSMDDYIHYITPQFSRTHINFQRVPTVDTSNPFSAKAIPTQDESFTVIRFRGLKKIDFPYLLSMLQGSFISASNTIVVPGGKLGLAMELIMAPLVEQLLQGKQINKR

Flanking regions ( +/- flanking 50bp)

TCATGCCGTCGGCGGAATTCCGCGGCTGATACGCCCGGAGGAACTGACCCATGTCCCGGACTCACCCGATTATTGCTGTTACCGGCTCCAGCGGAGCCGGTACAACGACCACCAGCCAGGCTTTCAGGAAGATATTTCAGCAACTTTCCGCCACACCGGCAACCCTGGAAGGCGACAGCTTTCACCGCTACACCCGCCCGGAAATGGATGCGGCTATCCGCAAAGCGCGGGAACAAGGCCGGTATATCAGCTACTTCGGTCCTGAAGCGAATGATTTCGGGCTGTTGGAAACCGCGTTCCGCCAGTATGGAGAAAACGGGAGCGGAGAACGCAGAAGGTACTTACACACATACGATGAAGCCGTGCCCTATAACCAGTTGCCCGGTACGTTTACCCCGCGTGAGCCACTGCCGGAAAATACCGATGTTCTGTTTTACGAGGGTTTGCACGGCGGGGTGGTCACGCCGGATCATAAAATTGCCGGTCATGTGGATTTACTGGTCGGCGTGGTGCCGATTGTTAATCTGGAATGGATCCAAAAGCTTGTCCGCGACACATCAGACCGGGGACACTCACGGGAAGCGGTGATGGACTCTGTCGTGCGCTCAATGGATGATTACATTCACTATATTACGCCGCAGTTTTCCCGCACGCATATTAATTTCCAGCGGGTGCCGACCGTAGACACGTCAAATCCGTTCTCTGCCAAAGCCATCCCGACACAGGATGAAAGCTTTACCGTGATCCGTTTTCGCGGTCTGAAAAAAATTGATTTCCCCTATTTATTGTCAATGTTACAAGGCTCATTCATTTCTGCCTCAAATACCATTGTCGTACCCGGCGGAAAATTGGGGCTGGCGATGGAATTAATTATGGCGCCACTTGTAGAACAATTATTACAGGGCAAACAAATAAATAAGCGATAAAAAAACCGGGTAATTATCATTGCCCGGTTTATTCTCAAAAATAAAAATAA