Homologs in group_1583

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10330 FBDBKF_10330 97.9 Morganella morganii S1 uspA universal stress protein UspA
EHELCC_14665 EHELCC_14665 97.9 Morganella morganii S2 uspA universal stress protein UspA
NLDBIP_14495 NLDBIP_14495 97.9 Morganella morganii S4 uspA universal stress protein UspA
LHKJJB_14850 LHKJJB_14850 97.9 Morganella morganii S3 uspA universal stress protein UspA
HKOGLL_13470 HKOGLL_13470 97.9 Morganella morganii S5 uspA universal stress protein UspA
PMI_RS14880 PMI_RS14880 91.0 Proteus mirabilis HI4320 uspA universal stress protein UspA

Distribution of the homologs in the orthogroup group_1583

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1583

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZA49 6.69e-89 258 84 0 145 3 uspA Universal stress protein A Yersinia pestis
P0AED4 7.77e-89 258 86 0 143 3 uspA Universal stress protein A Shigella sonnei
P0AED3 7.77e-89 258 86 0 143 3 uspA Universal stress protein A Shigella flexneri
P0AED0 7.77e-89 258 86 0 143 1 uspA Universal stress protein A Escherichia coli (strain K12)
P0AED1 7.77e-89 258 86 0 143 3 uspA Universal stress protein A Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AED2 7.77e-89 258 86 0 143 3 uspA Universal stress protein A Escherichia coli O157:H7
Q8ZLD7 1.08e-88 257 85 0 143 3 uspA Universal stress protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z268 5.02e-88 255 84 0 143 3 uspA Universal stress protein A Salmonella typhi
P60004 1.52e-87 254 86 0 143 3 uspA Universal stress protein A Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q9CLE9 4.66e-66 200 67 0 140 3 uspA Universal stress protein A homolog Pasteurella multocida (strain Pm70)
P44880 4.86e-66 200 67 0 140 1 uspA Universal stress protein A homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7VLK1 2.43e-53 167 56 0 140 3 uspA Universal stress protein A homolog Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q89A25 1.62e-43 143 47 1 140 3 uspA Universal stress protein A Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9RM66 3.58e-31 111 41 2 143 3 uspC Universal stress protein C Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67089 5.21e-28 103 37 0 141 3 uspD Universal stress protein D Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67090 5.21e-28 103 37 0 141 3 uspD Universal stress protein D Escherichia coli O157:H7
P0AAB9 5.87e-28 103 37 0 141 3 uspD Universal stress protein D Shigella flexneri
P0AAB8 5.87e-28 103 37 0 141 2 uspD Universal stress protein D Escherichia coli (strain K12)
Q8X560 6.68e-28 103 37 2 143 3 uspC Universal stress protein C Escherichia coli O157:H7
Q8FGN7 2.74e-27 102 37 2 143 3 uspC Universal stress protein C Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z5U4 6.05e-26 98 41 2 125 3 uspC Universal stress protein C Salmonella typhi
P46888 7.99e-26 98 36 2 143 2 uspC Universal stress protein C Escherichia coli (strain K12)
Q83AC1 1.56e-10 58 29 4 147 3 uspA1 Universal stress protein A homolog 1 Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q2FXL6 9.47e-05 43 32 0 78 3 SAOUHSC_01819 Putative universal stress protein SAOUHSC_01819 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q6GFZ7 9.47e-05 43 32 0 78 3 SAR1788 Putative universal stress protein SAR1788 Staphylococcus aureus (strain MRSA252)
Q5HF64 9.47e-05 43 32 0 78 3 SACOL1759 Putative universal stress protein SACOL1759 Staphylococcus aureus (strain COL)
Q99TF3 9.47e-05 43 32 0 78 3 SAV1710 Putative universal stress protein SAV1710 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2FG28 9.47e-05 43 32 0 78 3 SAUSA300_1656 Putative universal stress protein SAUSA300_1656 Staphylococcus aureus (strain USA300)
Q7A0N0 9.47e-05 43 32 0 78 3 MW1653 Putative universal stress protein MW1653 Staphylococcus aureus (strain MW2)
Q6G8L7 9.47e-05 43 32 0 78 3 SAS1637 Putative universal stress protein SAS1637 Staphylococcus aureus (strain MSSA476)
Q2YTD0 9.47e-05 43 32 0 78 3 SAB1569 Putative universal stress protein SAB1569 Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A551 9.47e-05 43 32 0 78 1 SA1532 Putative universal stress protein SA1532 Staphylococcus aureus (strain N315)
Q49YE0 0.000253 42 27 1 111 3 SSP1056 Putative universal stress protein SSP1056 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q8CS61 0.00053 41 30 0 78 3 SE_1385 Putative universal stress protein SE_1385 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNJ5 0.00053 41 30 0 78 3 SERP1273 Putative universal stress protein SERP1273 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14030
Feature type CDS
Gene uspA
Product universal stress protein UspA
Location 16592 - 17029 (strand: -1)
Length 438 (nucleotides) / 145 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1583
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00582 Universal stress protein family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0589 Signal transduction mechanisms (T) T Nucleotide-binding universal stress protein, UspA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06149 universal stress protein A - -

Protein Sequence

MAYKHILVAVDLSPESEVLVSKAVSMAKPYDAKVSLIHVDVNYSDLYTGLIDVNLGDMQQRITEETSNSLKNLSKNSGYEIQEMLSGSGDLGQVLVDAIRKYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDDDTA

Flanking regions ( +/- flanking 50bp)

CGGCGTAAGCCCTGCCAACCCTTAACACTTTGAACGGAAGGAATTTATTTATGGCATATAAACATATTTTGGTCGCAGTCGATCTCTCGCCTGAAAGTGAAGTGTTAGTGAGTAAAGCGGTTTCTATGGCGAAGCCTTACGATGCAAAAGTGTCGTTGATCCACGTTGATGTCAATTACTCTGACTTATACACCGGGCTTATCGATGTTAACCTGGGCGACATGCAGCAGCGTATTACTGAAGAAACCAGTAACTCACTGAAAAATTTATCCAAAAACTCAGGTTATGAGATTCAGGAAATGCTCAGCGGCAGCGGTGATCTCGGTCAGGTATTAGTCGATGCTATCAGAAAATATGATATGGACCTGGTTGTCTGCGGGCACCATCAGGATTTCTGGAGCAAACTGATGTCTTCTGCACGTCAGCTGATCAATACCGTTCATGTCGATATGTTGATTGTTCCGCTGCGTGACGATGATACCGCATAATCTTCTGTTGAAATATTATTCATATAAAATGCCTGCTTATGCAGGCATTT