Homologs in group_1578

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10250 FBDBKF_10250 77.6 Morganella morganii S1 - ABC-type uncharacterized transport system, periplasmic component
EHELCC_14585 EHELCC_14585 77.6 Morganella morganii S2 - ABC-type uncharacterized transport system, periplasmic component
NLDBIP_14415 NLDBIP_14415 77.6 Morganella morganii S4 - ABC-type uncharacterized transport system, periplasmic component
LHKJJB_14930 LHKJJB_14930 77.6 Morganella morganii S3 - ABC-type uncharacterized transport system, periplasmic component
HKOGLL_13550 HKOGLL_13550 77.6 Morganella morganii S5 - ABC-type uncharacterized transport system, periplasmic component
PMI_RS07365 PMI_RS07365 45.3 Proteus mirabilis HI4320 - DUF1007 family protein

Distribution of the homologs in the orthogroup group_1578

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1578

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44137 3.89e-38 133 38 4 192 3 HI_1249 Uncharacterized protein HI_1249 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13965
Feature type CDS
Gene -
Product DUF1007 family protein
Location 3678 - 4256 (strand: 1)
Length 579 (nucleotides) / 192 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1578
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06226 Protein of unknown function (DUF1007)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3683 General function prediction only (R) R ABC-type uncharacterized transport system, periplasmic component

Protein Sequence

MAHPHSFIEMDTTLVIDNNHLTGLSYVWVMDPMTSADILYDLLKTEEDSPQWKKQAASVMANIIGQSYFSELYYQNKKQPLKLFPDEYKMTRKGLQIVMSFRVSLLHPIPLAGSTIDLLTYEPTFFVSMAYTGSGTLHLSKPSESACKLTLTEAQPSDELKNYALSLDTGETPDDDLTLGRQFAQRVTLQCH

Flanking regions ( +/- flanking 50bp)

CGATATTATCTGTTTTTTTGATTTTAATATTTTTTTTCAGTCCCCGTATTATGGCGCACCCGCACAGTTTTATTGAGATGGATACCACATTAGTTATTGATAATAATCATCTTACCGGACTGAGCTATGTGTGGGTAATGGACCCGATGACATCCGCAGATATTTTGTATGATTTACTGAAAACAGAGGAAGACAGCCCGCAGTGGAAAAAGCAGGCGGCATCTGTCATGGCGAATATTATCGGGCAATCCTATTTTTCAGAGCTCTATTATCAGAATAAAAAACAACCGCTGAAATTATTTCCTGATGAATACAAGATGACCCGGAAGGGATTACAGATTGTGATGTCGTTTCGTGTATCGCTGTTACACCCAATCCCGCTGGCGGGCAGTACGATTGACTTACTGACGTATGAACCGACCTTTTTTGTCAGTATGGCGTATACCGGCAGCGGGACATTGCATCTTTCTAAGCCGTCAGAATCAGCGTGTAAACTGACCTTAACCGAGGCGCAGCCGTCGGATGAGCTTAAAAATTACGCCTTATCATTAGATACCGGGGAAACCCCGGATGATGATCTTACACTGGGTCGTCAGTTTGCACAGCGGGTCACATTGCAATGCCATTAATAAAGACACCGACAATAAAGCACGGTCATATTGCGCTATGGATTCTGTTC