COG3683


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3683, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type uncharacterized transport system, periplasmic component
Function(s) descr. General function prediction only (R)

Occurence in the database

COG3683 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1578 FBDBKF_10250 3314 3967 1 ABC-type uncharacterized transport system, periplasmic component Morganella morganii S1
1 group_1578 EHELCC_14585 3304 3957 1 ABC-type uncharacterized transport system, periplasmic component Morganella morganii S2
2 group_1578 NLDBIP_14415 3304 3957 1 ABC-type uncharacterized transport system, periplasmic component Morganella morganii S4
3 group_1578 LHKJJB_14930 137769 138422 -1 ABC-type uncharacterized transport system, periplasmic component Morganella morganii S3
4 group_1578 HKOGLL_13550 137769 138422 -1 ABC-type uncharacterized transport system, periplasmic component Morganella morganii S5
5 group_1578 F4V73_RS13965 3678 4256 1 DUF1007 family protein Morganella psychrotolerans
6 group_1578 PMI_RS07365 1612320 1612985 -1 DUF1007 family protein Proteus mirabilis HI4320