Homologs in group_2754

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07680 FBDBKF_07680 89.9 Morganella morganii S1 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
EHELCC_13510 EHELCC_13510 89.9 Morganella morganii S2 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
NLDBIP_13955 NLDBIP_13955 89.9 Morganella morganii S4 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
LHKJJB_08895 LHKJJB_08895 89.9 Morganella morganii S3 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
HKOGLL_08445 HKOGLL_08445 89.9 Morganella morganii S5 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit

Distribution of the homologs in the orthogroup group_2754

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2754

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64557 5.24e-100 295 56 1 258 4 ygfM Uncharacterized protein YgfM Escherichia coli (strain K12)
P64558 5.24e-100 295 56 1 258 4 ygfM Uncharacterized protein YgfM Escherichia coli O157:H7
Q0QLF4 6.46e-07 52 30 3 133 1 ndhF Nicotinate dehydrogenase FAD-subunit Eubacterium barkeri
R4ZGN4 8.52e-06 50 24 10 254 1 AXOR Xanthine dehydrogenase Blastobotrys adeninivorans
Q59127 0.000143 45 24 10 262 1 ndhM Nicotine 6-hydroxylase medium subunit Paenarthrobacter nicotinovorans
O23887 0.00061 44 26 6 156 1 AO1 Indole-3-acetaldehyde oxidase Zea mays

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13420
Feature type CDS
Gene ygfM
Product molybdopterin-dependent oxidoreductase FAD-binding subunit
Location 316602 - 317378 (strand: 1)
Length 777 (nucleotides) / 258 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2754
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00941 FAD binding domain in molybdopterin dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1319 Energy production and conversion (C) C Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12529 putative selenate reductase FAD-binding subunit Selenocompound metabolism -

Protein Sequence

MIEQFFRPATLSQATELKNRFQDSAVWLAGGSKLNALLTKTSRNIAISLSLLPLKTIEWQDGILRIGATVTLEALRESPLIPRALYDALGFVYSRHIRNQATIGGEIAACQREHALLPVLLVLDAQVQLANSNDVISLESYLAKPDERLITHLVLQDPFRRCATRTIRETADGWSVVTAAVALTGNNEQRIAVDGVGCAISRLSQIEAKQLSGEALEKAVSQAINPKADLTGSEEYKRYITGILVSDLLTDCRQMGEK

Flanking regions ( +/- flanking 50bp)

CATGGCCTGCGGTTATACCGCAGGCCTGAAGAGCAATGTAGGGGTAACCCATGATCGAACAATTTTTCCGTCCTGCCACTTTATCGCAGGCAACCGAGCTGAAAAACCGGTTTCAGGACAGTGCAGTCTGGCTTGCCGGTGGCAGTAAACTGAATGCCTTACTCACAAAAACCAGCCGCAATATCGCGATTTCGCTGTCTCTGCTGCCGCTGAAAACCATTGAATGGCAGGATGGCATTCTGCGTATCGGAGCTACTGTCACACTGGAAGCACTGCGTGAAAGCCCGCTGATCCCGCGCGCGCTGTATGACGCACTCGGTTTTGTTTATTCACGCCATATCCGCAACCAGGCAACTATCGGCGGGGAAATTGCCGCCTGCCAGCGCGAGCATGCGCTGCTGCCGGTTCTGCTGGTGCTGGATGCACAGGTACAGCTCGCCAACAGCAATGATGTTATTTCGCTGGAAAGCTACCTCGCTAAACCGGATGAGCGCCTGATCACGCACCTGGTGCTACAGGATCCGTTCCGCCGCTGCGCGACGCGGACAATCCGTGAAACCGCCGATGGCTGGTCTGTTGTTACCGCCGCTGTCGCACTGACCGGCAACAATGAGCAACGAATTGCGGTGGATGGTGTTGGTTGCGCGATTTCCCGTCTGTCACAAATTGAAGCAAAACAACTCAGTGGCGAAGCCCTGGAAAAAGCGGTCAGTCAGGCAATAAACCCGAAAGCTGACCTGACGGGCAGCGAAGAGTACAAACGCTATATCACCGGAATTTTAGTATCAGACCTGCTGACAGACTGCCGGCAAATGGGGGAGAAATAACAGATGAACGTCCATTTTATACTTAACGGCACCCCGCATTCACTTGATTG