Homologs in group_2770

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07795 FBDBKF_07795 91.4 Morganella morganii S1 xdhB xanthine dehydrogenase FAD-binding subunit XdhB
EHELCC_13625 EHELCC_13625 91.4 Morganella morganii S2 xdhB xanthine dehydrogenase FAD-binding subunit XdhB
NLDBIP_14070 NLDBIP_14070 91.4 Morganella morganii S4 xdhB xanthine dehydrogenase FAD-binding subunit XdhB
LHKJJB_08780 LHKJJB_08780 91.4 Morganella morganii S3 xdhB xanthine dehydrogenase FAD-binding subunit XdhB
HKOGLL_08330 HKOGLL_08330 91.4 Morganella morganii S5 xdhB xanthine dehydrogenase FAD-binding subunit XdhB

Distribution of the homologs in the orthogroup group_2770

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2770

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q46800 6.39e-137 391 62 0 291 4 xdhB Putative xanthine dehydrogenase FAD-binding subunit XdhB Escherichia coli (strain K12)
Q8X6C5 1.2e-135 388 62 0 291 3 xdhB Xanthine dehydrogenase FAD-binding subunit Escherichia coli O157:H7
P19914 6.49e-31 120 32 5 284 1 cutM Carbon monoxide dehydrogenase medium chain Hydrogenophaga pseudoflava
O87681 4.6e-24 102 30 5 288 1 kdhA 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha Paenarthrobacter nicotinovorans
Q4J6M6 1.48e-23 100 25 4 286 1 cutB Glyceraldehyde dehydrogenase medium chain Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q0QLF4 2.12e-22 97 28 6 252 1 ndhF Nicotinate dehydrogenase FAD-subunit Eubacterium barkeri
P19920 5.8e-22 96 30 4 281 1 coxM Carbon monoxide dehydrogenase medium chain Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
Q8GUQ8 3.46e-18 88 28 7 266 1 XDH1 Xanthine dehydrogenase 1 Arabidopsis thaliana
F4JLI5 5.17e-18 87 28 7 265 2 XDH2 Xanthine dehydrogenase 2 Arabidopsis thaliana
Q59127 1.46e-16 81 24 3 280 1 ndhM Nicotine 6-hydroxylase medium subunit Paenarthrobacter nicotinovorans
P10351 1.45e-15 80 29 11 275 2 ry Xanthine dehydrogenase Drosophila melanogaster
Q6AUV1 1.83e-15 80 26 6 265 2 XDH Xanthine dehydrogenase Oryza sativa subsp. japonica
P91711 3.34e-15 79 28 9 269 3 Xdh Xanthine dehydrogenase Drosophila subobscura
P22811 6.06e-15 78 27 9 269 3 ry Xanthine dehydrogenase Drosophila pseudoobscura pseudoobscura
P47990 1.07e-13 74 26 5 231 1 XDH Xanthine dehydrogenase/oxidase Gallus gallus
D7REY4 2.37e-13 72 27 9 288 1 cdhB Caffeine dehydrogenase subunit beta Pseudomonas sp. (strain CBB1)
Q12553 9.42e-13 72 25 5 261 2 hxA Xanthine dehydrogenase Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
O33820 2.24e-12 69 29 9 267 1 hcrB 4-hydroxybenzoyl-CoA reductase subunit beta Thauera aromatica
P08793 2.99e-11 67 25 10 247 2 XDH Xanthine dehydrogenase Calliphora vicina
H9TB18 1.39e-10 65 24 8 297 2 AOX4 Aldehyde oxidase 4 Cavia porcellus
O32145 6.34e-10 62 32 3 137 2 pucC Probable xanthine dehydrogenase subunit C Bacillus subtilis (strain 168)
P48034 1.53e-09 62 25 8 263 1 AOX1 Aldehyde oxidase 1 Bos taurus
A0A1U8QNG8 1.76e-09 62 27 6 252 1 hxnS Nicotinate hydroxylase hnxS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
P80457 3.54e-09 61 24 5 225 1 XDH Xanthine dehydrogenase/oxidase Bos taurus
Q3TYQ9 5e-09 60 24 8 275 1 Aox4 Aldehyde oxidase 4 Mus musculus
Q5QE79 5.23e-09 60 24 6 267 2 Aox4 Aldehyde oxidase 4 Rattus norvegicus
Q8X6J0 6.48e-09 59 26 11 319 3 paoB Aldehyde oxidoreductase FAD-binding subunit PaoB Escherichia coli O157:H7
P22985 6.62e-09 60 27 8 227 1 Xdh Xanthine dehydrogenase/oxidase Rattus norvegicus
P47989 1.39e-08 59 26 8 227 1 XDH Xanthine dehydrogenase/oxidase Homo sapiens
P77324 1.93e-08 58 26 12 324 1 paoB Aldehyde oxidoreductase FAD-binding subunit PaoB Escherichia coli (strain K12)
Q5SGK3 7.11e-08 57 22 7 283 1 Aox2 Aldehyde oxidase 2 Mus musculus
Q5QE78 8.68e-08 57 22 7 280 2 Aox2 Aldehyde oxidase 2 Rattus norvegicus
Q54FB7 2.16e-07 55 23 8 281 3 xdh Xanthine dehydrogenase Dictyostelium discoideum
Q00519 1.03e-06 53 25 7 227 1 Xdh Xanthine dehydrogenase/oxidase Mus musculus
H9TB19 2.6e-06 52 24 8 285 2 AOX2 Aldehyde oxidase 2 Cavia porcellus
R4ZGN4 2.62e-06 52 23 6 282 1 AXOR Xanthine dehydrogenase Blastobotrys adeninivorans
Q9MYW6 7.08e-06 51 24 6 223 2 XDH Xanthine dehydrogenase/oxidase Felis catus
O54754 1.63e-05 50 25 4 190 1 Aox1 Aldehyde oxidase 1 Mus musculus
Q9Z0U5 2.54e-05 49 25 4 190 1 Aox1 Aldehyde oxidase 1 Rattus norvegicus
P80456 9.49e-05 47 24 4 189 1 AOX1 Aldehyde oxidase 1 Oryctolagus cuniculus
Q5FB27 0.000248 46 21 6 245 2 AOX1 Aldehyde oxidase 1 Macaca fascicularis
G3X982 0.000298 46 22 5 203 1 Aox3 Aldehyde oxidase 3 Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13250
Feature type CDS
Gene xdhB
Product xanthine dehydrogenase FAD-binding subunit XdhB
Location 277380 - 278258 (strand: 1)
Length 879 (nucleotides) / 292 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2770
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00941 FAD binding domain in molybdopterin dehydrogenase
PF03450 CO dehydrogenase flavoprotein C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1319 Energy production and conversion (C) C Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MYDFETYKRAESITHAVALLAENPQAKLLAGGTDVLIQLHHLNERFRHIVDIHDLPALRGISADDNGHIRIGSATTFSELIDSPLINQCLPALSEAAATIAGPQIRNVATYGGNICNGATSGDSACPSLIYQAELEIATPDGIRRRPLRGFHTGPGKVAFEPGELLVAFHFSPENYQNKGAASYKYAMRGAMDIATINCAALCDIRDGRFEELRLAFGVAAPTPVRCEHAEAAAVGKPVTLATLKAVSQAIEQDVAPRTSWRAEKEFRLHLIRVLSERVIRAAAERLGEKIA

Flanking regions ( +/- flanking 50bp)

CGGCTGTTCCGGGAATTTGTCAACGCCGGGCTAATCAGGGGATAATGACGATGTATGATTTTGAAACTTACAAACGCGCTGAGAGCATCACTCATGCCGTCGCCCTGCTTGCTGAAAACCCGCAGGCAAAACTACTGGCAGGCGGAACAGATGTCTTAATTCAGTTACATCATCTGAATGAGCGCTTCCGTCATATTGTGGATATCCATGACTTACCGGCACTGCGCGGAATAAGCGCTGATGATAACGGTCATATCCGGATAGGCTCTGCCACAACATTCTCCGAACTGATTGACAGCCCGCTGATTAATCAGTGCCTTCCCGCACTGAGCGAAGCGGCGGCAACCATTGCCGGACCACAAATCCGCAATGTGGCAACTTACGGCGGAAATATCTGTAACGGCGCCACCAGCGGCGACTCCGCCTGCCCTTCCCTGATTTATCAGGCAGAGCTGGAAATTGCCACACCGGACGGCATCCGCCGCAGACCACTGCGCGGCTTCCATACCGGTCCGGGTAAAGTAGCCTTTGAGCCGGGCGAACTGCTGGTTGCATTCCATTTCTCGCCGGAAAATTACCAAAACAAAGGTGCGGCGAGCTATAAATACGCCATGCGTGGTGCGATGGATATTGCCACAATCAACTGTGCGGCACTGTGTGATATCCGCGACGGACGCTTTGAAGAACTGCGCCTTGCCTTTGGTGTTGCCGCACCCACACCGGTACGCTGTGAGCACGCTGAAGCGGCAGCTGTCGGGAAACCGGTCACATTAGCAACACTGAAAGCCGTCAGCCAGGCCATTGAGCAGGATGTTGCACCGCGCACCTCATGGCGCGCCGAAAAAGAGTTCCGCTTACATCTCATCCGTGTTCTGAGTGAACGGGTGATCCGCGCGGCGGCTGAACGCCTGGGAGAAAAAATCGCATGAATATGAAAGAGTGGATAACTATCAACTGCACACTGAACGGGCAATTACGC