Homologs in group_30

Help

14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02780 FBDBKF_02780 25.5 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_03250 EHELCC_03250 25.5 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_00210 NLDBIP_00210 25.5 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_01825 LHKJJB_01825 25.5 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_01865 HKOGLL_01865 25.5 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS01700 F4V73_RS01700 16.0 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS03270 F4V73_RS03270 25.2 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS04355 F4V73_RS04355 25.7 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS05245 F4V73_RS05245 24.1 Morganella psychrotolerans - LysR substrate-binding domain-containing protein
F4V73_RS05520 F4V73_RS05520 31.2 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS06440 F4V73_RS06440 17.5 Morganella psychrotolerans - LysR substrate-binding domain-containing protein
F4V73_RS10230 F4V73_RS10230 28.7 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS13375 F4V73_RS13375 22.1 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS03935 PMI_RS03935 28.2 Proteus mirabilis HI4320 yafC DNA-binding transcriptional regulator YafC

Distribution of the homologs in the orthogroup group_30

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_30

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76250 1.99e-38 140 32 4 289 1 dmlR HTH-type transcriptional regulator DmlR Escherichia coli (strain K12)
Q0TD46 1.94e-36 135 31 5 290 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1R6S1 3.11e-36 135 31 5 290 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain UTI89 / UPEC)
Q8FDH0 3.11e-36 135 31 5 290 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P45463 8.18e-36 134 30 5 290 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain K12)
Q8XBK9 9.57e-36 134 30 5 290 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O157:H7
Q9JPU9 2.7e-35 132 30 4 293 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
Q9JXW7 2.03e-34 130 30 4 293 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P52689 1.84e-32 125 26 3 300 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
P77333 9.55e-31 120 29 4 293 1 pgrR HTH-type transcriptional regulator PgrR Escherichia coli (strain K12)
P37641 1.03e-29 117 29 2 285 3 yhjC Uncharacterized HTH-type transcriptional regulator YhjC Escherichia coli (strain K12)
P30864 2.67e-29 116 28 4 291 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q01610 2.72e-29 116 29 6 297 3 PA2220 Putative transcriptional regulator Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P43011 2.29e-28 114 28 2 277 3 HI_1364 Uncharacterized HTH-type transcriptional regulator HI_1364 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75836 3.56e-28 113 26 4 291 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
P72131 4.68e-28 113 30 6 295 1 ptxR HTH-type transcriptional regulator PtxR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZDG9 3.48e-27 111 27 3 284 3 PA14_22550 HTH-type transcriptional repressor PA14_22550 Pseudomonas aeruginosa (strain UCBPP-PA14)
P67662 4.44e-25 105 28 5 294 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 4.44e-25 105 28 5 294 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 4.44e-25 105 28 5 294 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
A5F9F9 8.74e-17 82 26 8 291 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P0C6D1 1.01e-16 82 26 8 291 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P55576 3.61e-13 72 25 8 293 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P77744 2.17e-12 69 23 8 267 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P39592 3.84e-12 68 22 7 250 3 ywbI Uncharacterized HTH-type transcriptional regulator YwbI Bacillus subtilis (strain 168)
P37459 4.16e-12 69 22 4 295 3 sinR Probable HTH-type transcriptional regulator SinR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O34685 5.47e-12 68 32 1 125 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P20668 1.33e-11 67 31 0 122 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
O32255 3.28e-11 66 27 6 200 3 yvbU Uncharacterized HTH-type transcriptional regulator YvbU Bacillus subtilis (strain 168)
A7Z5E4 6.64e-11 65 30 1 125 3 yofA HTH-type transcriptional regulator YofA Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)
P0A9F6 1.04e-10 65 24 9 267 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 1.04e-10 65 24 9 267 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 1.04e-10 65 24 9 267 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
P71318 1.06e-10 64 27 6 248 3 oxyR Hydrogen peroxide-inducible genes activator Pectobacterium carotovorum subsp. carotovorum
Q9X725 2.02e-10 63 26 6 250 3 oxyR Hydrogen peroxide-inducible genes activator Dickeya chrysanthemi
Q9X5P2 2.53e-10 63 34 2 123 2 oxyR Probable hydrogen peroxide-inducible genes activator Streptomyces viridosporus
P96725 3.83e-10 63 21 8 292 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
P0ACQ4 3.97e-10 63 26 5 248 1 oxyR DNA-binding transcriptional dual regulator OxyR Escherichia coli (strain K12)
P0ACQ5 3.97e-10 63 26 5 248 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACQ6 3.97e-10 63 26 5 248 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O157:H7
P46068 4.44e-10 63 25 10 267 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
Q57748 5.85e-10 62 23 11 302 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P45099 6.71e-10 62 24 9 274 3 gcvA Glycine cleavage system transcriptional activator homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O32186 8.29e-10 62 28 2 135 3 yusT Uncharacterized HTH-type transcriptional regulator YusT Bacillus subtilis (strain 168)
P42507 1.24e-09 61 28 3 168 3 hvrB AhcY transcriptional activator HvrB Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P52696 1.27e-09 61 26 0 127 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P0ACR8 2.72e-09 60 30 1 136 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Shigella flexneri
P0ACR7 2.72e-09 60 30 1 136 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Escherichia coli (strain K12)
P27111 4.39e-09 60 29 0 117 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
Q8X4M5 7.52e-09 59 29 0 117 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
A2CI69 1.37e-08 58 28 2 150 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
Q4G384 1.75e-08 58 30 0 129 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
O06703 1.93e-08 58 22 8 307 3 bbuR HTH-type transcriptional regulator BbuR Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
P44821 2.38e-08 57 25 0 124 3 ilvY HTH-type transcriptional activator IlvY Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37499 2.57e-08 57 28 0 120 3 yybE Uncharacterized HTH-type transcriptional regulator YybE Bacillus subtilis (strain 168)
P77559 3.82e-08 57 29 2 137 3 ynfL Uncharacterized HTH-type transcriptional regulator YnfL Escherichia coli (strain K12)
P44418 6.2e-08 56 21 8 270 3 oxyR Hydrogen peroxide-inducible genes activator Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q04778 1.06e-07 55 27 2 143 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
Q57083 1.2e-07 55 25 8 291 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
P94501 1.24e-07 55 27 1 120 1 gltR HTH-type transcriptional regulator GltR Bacillus subtilis (strain 168)
P52686 1.28e-07 55 28 0 122 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
P70785 1.52e-07 55 31 0 122 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
O33945 1.58e-07 55 28 7 198 3 None Probable cat1 operon transcriptional activator Acinetobacter lwoffii
O68014 2.66e-07 54 27 5 198 1 benM HTH-type transcriptional regulator BenM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q6B936 3.04e-07 54 24 0 129 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
P64562 4.47e-07 50 39 0 64 5 yqfE Putative protein YqfE Escherichia coli (strain K12)
P64563 4.47e-07 50 39 0 64 4 yqfE Uncharacterized protein YqfE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P07774 5.72e-07 53 29 3 143 1 catM HTH-type transcriptional regulator CatM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q1XDT2 6.01e-07 53 25 0 129 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
Q8YQ82 6.16e-07 53 27 0 129 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
B4E8V9 8.07e-07 53 24 7 258 1 cysB HTH-type transcriptional regulator CysB Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
P51205 8.73e-07 53 25 0 129 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
P05051 1.17e-06 52 24 2 141 3 ampR HTH-type transcriptional activator AmpR Enterobacter cloacae
P05827 1.34e-06 52 29 1 143 3 ilvY HTH-type transcriptional regulator IlvY Escherichia coli (strain K12)
P16931 1.36e-06 52 26 2 121 3 dgdR HTH-type transcriptional regulator DgdR Burkholderia cepacia
P42722 1.56e-06 52 22 9 271 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q3MCB5 1.57e-06 52 27 0 129 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
O87883 1.87e-06 50 27 6 186 3 oxyR Probable hydrogen peroxide-inducible genes activator (Fragment) Mycobacterium xenopi
P96194 2.11e-06 50 33 0 89 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
O78432 2.34e-06 52 26 0 129 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
P52669 2.46e-06 52 26 4 168 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
P0A2Q2 2.66e-06 51 28 1 143 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q3 2.66e-06 51 28 1 143 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhi
P33634 2.69e-06 51 20 9 285 3 yfiE Uncharacterized HTH-type transcriptional regulator YfiE Escherichia coli (strain K12)
P73123 4.9e-06 51 25 0 129 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O19892 5.15e-06 50 25 0 129 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
P52660 5.16e-06 50 27 1 144 3 blaA HTH-type transcriptional regulator BlaA Proteus vulgaris
P77309 7.01e-06 50 27 1 122 3 yneJ Uncharacterized HTH-type transcriptional regulator YneJ Escherichia coli (strain K12)
P94387 8.45e-06 50 25 2 130 3 ycgK Uncharacterized HTH-type transcriptional regulator YcgK Bacillus subtilis (strain 168)
O35038 2.08e-05 48 22 1 120 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P0ACR4 2.25e-05 48 23 7 292 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 2.25e-05 48 23 7 292 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 2.25e-05 48 23 7 292 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
P45461 2.43e-05 48 28 5 147 3 ampR HTH-type transcriptional activator AmpR Yersinia enterocolitica
P12529 2.88e-05 48 24 3 150 1 ampR HTH-type transcriptional activator AmpR Citrobacter freundii
P48271 3.56e-05 48 22 0 123 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
P0ACQ9 4.88e-05 47 25 0 119 3 tdcA HTH-type transcriptional regulator TdcA Shigella flexneri
P0ACQ7 4.88e-05 47 25 0 119 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli (strain K12)
P0ACQ8 4.88e-05 47 25 0 119 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli O157:H7
P52665 5.34e-05 45 36 0 75 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
P42427 9.46e-05 46 33 0 71 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
O87324 0.000101 47 26 4 184 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium marinum
P67660 0.000104 47 23 6 260 1 yhaJ Probable HTH-type transcriptional regulator YhaJ Escherichia coli (strain K12)
P67661 0.000104 47 23 6 260 1 yhaJ HTH-type transcriptional regulator YhaJ Escherichia coli O157:H7
P49518 0.000148 46 24 2 143 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
Q05840 0.000254 45 42 0 57 3 clcR HTH-type transcriptional regulator ClcR Pseudomonas putida
Q85G62 0.000303 45 23 0 135 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
A0T0V5 0.000364 45 22 0 122 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
Q55459 0.000703 44 23 1 116 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P77700 0.000888 43 26 2 124 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13185
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 256312 - 257238 (strand: 1)
Length 927 (nucleotides) / 308 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_30
Orthogroup size 15
N. genomes 7

Actions

Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MSGLEEGLGDLYYFTLVARHGGYAAASRATGIAKNKLSRRVTALEERLNVRLLQRTNRNVTLTETGHRLMAHGLAVLSEVEAAQEMITNSLSEPSGLVRISCPSLASRLLLAECIAECMKQYPKINIQLLATDKRCDPITEKIDIAIRLRERKNMEKGFIARELGKSIRILVATPEYLERKGHPVTLTDLAGHALLSLIDNEHEQIWEFIDKEENTATLSADPHLSCSEWDIVQTALFSHQGIALLPDMICGDALHSGKLIRVLPRWSRHPLIVHMVFPTRRGMLPAVRVFIDFLAARLPAMLAVTPG

Flanking regions ( +/- flanking 50bp)

AAAATGGGATAAAATAAGACACAGTGTTACAAAAATAGGGTTAATGTCTGATGAGTGGGTTGGAAGAAGGTCTTGGTGATTTATATTATTTCACACTGGTGGCGCGGCACGGCGGTTATGCAGCAGCAAGCCGGGCAACAGGGATCGCAAAAAATAAGCTGAGCCGGCGGGTCACCGCCCTGGAAGAACGCTTAAATGTGCGCCTGCTGCAACGCACAAACCGGAATGTCACACTGACCGAAACAGGACACCGGCTTATGGCACACGGATTAGCTGTACTTTCCGAAGTTGAGGCTGCCCAGGAGATGATTACCAACAGCTTGTCGGAACCCTCCGGACTGGTCAGAATCAGCTGCCCGTCACTGGCAAGCCGTTTATTACTGGCTGAATGTATTGCCGAATGCATGAAGCAATATCCGAAGATAAATATTCAGTTATTAGCAACGGATAAGCGCTGTGATCCTATTACTGAAAAAATAGATATTGCTATCCGGCTAAGGGAAAGAAAGAACATGGAAAAGGGTTTTATAGCGCGGGAACTGGGGAAAAGTATCAGGATCCTCGTTGCAACACCGGAGTACCTCGAAAGAAAAGGTCATCCTGTCACCCTGACGGATTTAGCCGGTCACGCCTTATTAAGCCTGATAGATAATGAACATGAACAAATATGGGAGTTTATTGATAAGGAAGAGAATACGGCAACATTATCAGCAGATCCTCATCTGTCCTGCAGTGAATGGGACATAGTACAAACTGCATTATTTTCTCACCAGGGGATCGCACTGTTGCCTGATATGATCTGTGGTGACGCACTGCACTCCGGTAAGCTTATCCGGGTACTTCCCCGGTGGAGCCGGCATCCGTTGATTGTACATATGGTCTTTCCCACGCGGCGGGGAATGCTGCCCGCCGTCCGTGTTTTCATTGATTTTCTGGCGGCCCGCCTGCCTGCGATGTTGGCAGTCACACCCGGATGAACCGGCAGTCATCAGCGGGCATAACAAACCGTACCGCTGATGCCATACAA