Homologs in group_302

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07975 FBDBKF_07975 78.3 Morganella morganii S1 - Ca2+-binding protein, RTX toxin-related
EHELCC_13805 EHELCC_13805 78.3 Morganella morganii S2 - Ca2+-binding protein, RTX toxin-related
NLDBIP_14250 NLDBIP_14250 78.3 Morganella morganii S4 - Ca2+-binding protein, RTX toxin-related
LHKJJB_08600 LHKJJB_08600 78.3 Morganella morganii S3 - Ca2+-binding protein, RTX toxin-related
HKOGLL_08150 HKOGLL_08150 78.3 Morganella morganii S5 - Ca2+-binding protein, RTX toxin-related
F4V73_RS16265 F4V73_RS16265 33.4 Morganella psychrotolerans - calcium-binding protein
PMI_RS01355 PMI_RS01355 58.7 Proteus mirabilis HI4320 - serralysin family metalloprotease

Distribution of the homologs in the orthogroup group_302

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_302

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07268 9.63e-177 508 56 7 481 1 None Serralysin Serratia marcescens (strain ATCC 21074 / E-15)
P23694 1.35e-176 507 56 7 481 1 None Serralysin Serratia marcescens
Q11137 2.27e-172 496 54 5 501 3 zapA Serralysin Proteus mirabilis
P19144 7.34e-159 462 53 8 477 1 prtC Serralysin C Dickeya chrysanthemi
Q07295 8.23e-157 456 52 9 477 1 prtA Serralysin A Dickeya chrysanthemi
Q1ID47 3.84e-141 417 49 10 484 1 aprA Metalloprotease AprA Pseudomonas entomophila (strain L48)
P16317 1.87e-138 410 49 11 478 1 prtC Serralysin C Dickeya chrysanthemi
Q03023 5.76e-134 398 47 9 484 1 aprA Serralysin Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P16316 1.52e-131 392 48 13 493 1 prtB Serralysin B Dickeya chrysanthemi
A0A0C5CJR8 3.48e-126 378 49 14 473 1 aprA Metallopeptidase AprA Pseudomonas marginalis
Q84F70 8.28e-124 373 52 8 407 3 prtA1 Serralysin Photorhabdus luminescens
Q07162 1.35e-123 372 45 10 500 1 prtG Serralysin G Dickeya chrysanthemi
Q7N8R3 1.68e-121 367 51 7 406 3 prtA Serralysin Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P82115 2.25e-120 363 51 8 408 1 prtA Serralysin Photorhabdus sp. (strain Az29)
Q44494 1.05e-12 74 44 2 115 1 algE1 Mannuronan C5-epimerase AlgE1 Azotobacter vinelandii
Q44494 1.71e-10 67 37 4 140 1 algE1 Mannuronan C5-epimerase AlgE1 Azotobacter vinelandii
Q44494 1.42e-09 64 49 1 81 1 algE1 Mannuronan C5-epimerase AlgE1 Azotobacter vinelandii
Q44494 9.4e-08 58 44 1 83 1 algE1 Mannuronan C5-epimerase AlgE1 Azotobacter vinelandii
Q9ZFG9 1.34e-12 73 48 1 83 1 algE7 Alginate lyase 7 Azotobacter vinelandii
Q9ZFG9 3.52e-12 72 44 1 101 1 algE7 Alginate lyase 7 Azotobacter vinelandii
Q9ZFG9 1.9e-07 57 40 1 83 1 algE7 Alginate lyase 7 Azotobacter vinelandii
Q44493 2.46e-10 66 46 1 92 1 algE4 Mannuronan C5-epimerase AlgE4 Azotobacter vinelandii
Q44495 4.87e-10 65 42 1 85 1 algE2 Mannuronan C5-epimerase AlgE2 Azotobacter vinelandii
Q44495 3.44e-08 60 41 1 84 1 algE2 Mannuronan C5-epimerase AlgE2 Azotobacter vinelandii
Q44495 3.92e-08 59 44 1 83 1 algE2 Mannuronan C5-epimerase AlgE2 Azotobacter vinelandii
Q44495 4.69e-07 56 40 4 105 1 algE2 Mannuronan C5-epimerase AlgE2 Azotobacter vinelandii
Q44496 7.02e-10 65 48 1 84 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44496 3.54e-09 63 41 1 85 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44496 1.2e-08 61 34 4 153 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44496 1.55e-08 61 36 3 124 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44496 3.67e-08 60 41 1 85 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44496 8.11e-08 58 44 1 83 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44496 1.85e-06 54 42 1 83 3 algE3 Mannuronan C5-epimerase AlgE3 Azotobacter vinelandii
Q44492 7.14e-10 65 39 2 112 2 algE5 Mannuronan C5-epimerase AlgE5 Azotobacter vinelandii
Q44492 8.32e-09 62 42 1 85 2 algE5 Mannuronan C5-epimerase AlgE5 Azotobacter vinelandii
Q44492 3.75e-08 59 44 1 83 2 algE5 Mannuronan C5-epimerase AlgE5 Azotobacter vinelandii
Q44492 4.81e-07 56 35 3 123 2 algE5 Mannuronan C5-epimerase AlgE5 Azotobacter vinelandii
Q9ZFH0 5.75e-07 55 37 3 117 1 algE6 Mannuronan C5-epimerase AlgE6 Azotobacter vinelandii
Q9ZFH0 8.2e-07 55 35 3 132 1 algE6 Mannuronan C5-epimerase AlgE6 Azotobacter vinelandii
Q57506 1.96e-06 54 38 5 116 3 cya Bifunctional hemolysin/adenylate cyclase Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q57506 5.54e-05 49 41 1 72 3 cya Bifunctional hemolysin/adenylate cyclase Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q57506 0.000161 48 56 0 44 3 cya Bifunctional hemolysin/adenylate cyclase Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q57506 0.000562 46 44 0 59 3 cya Bifunctional hemolysin/adenylate cyclase Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
P0DKX7 4.25e-06 53 50 0 59 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0DKX7 1.04e-05 52 29 10 231 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0DKX7 5.13e-05 50 40 1 72 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0DKX7 0.000165 48 56 0 44 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
J7QLC0 4.25e-06 53 50 0 59 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
J7QLC0 1.04e-05 52 29 10 231 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
J7QLC0 5.13e-05 50 40 1 72 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
J7QLC0 0.000165 48 56 0 44 1 cya Bifunctional hemolysin/adenylate cyclase Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
P16462 5e-05 49 34 6 146 1 ltxA Leukotoxin Aggregatibacter actinomycetemcomitans
P55126 0.000222 47 38 2 77 3 frpA Iron-regulated protein FrpA Neisseria meningitidis serogroup C
Q9K0K9 0.000416 47 38 2 77 3 frpA Iron-regulated protein FrpA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P55127 0.000596 46 38 2 77 1 frpC Iron-regulated protein FrpC Neisseria meningitidis serogroup C
Q9JYV5 0.000622 46 38 2 77 3 frpC Iron-regulated protein FrpC Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13010
Feature type CDS
Gene -
Product serralysin family metalloprotease
Location 215450 - 216904 (strand: -1)
Length 1455 (nucleotides) / 484 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_302
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00353 RTX calcium-binding nonapeptide repeat (4 copies)
PF00413 Matrixin
PF08548 Peptidase M10 serralysin C terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2931 Secondary metabolites biosynthesis, transport and catabolism (Q) Q Ca2+-binding protein, RTX toxin-related

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01406 serralysin [EC:3.4.24.40] Cationic antimicrobial peptide (CAMP) resistance -

Protein Sequence

MGVAAYGKEGGWSFINDILSSPGRGNGRYINNKISYDAFDAGDHIARKNTTWNGIDKIGQPAEVTYSFPTWEGMYRNAFGDKGLQGFNENQQAQARLSLQSWSDVANVKFTEVNAGKGEIYTNITFGYINDKYTQAYAMLPFSRDEWGRPFTDSRGYDVSGQTWYSSTPGALNITPENGNYGRLTMTHEIGHSLGLLHPGDYNAGQGSPSYKNADYAEDTRQYSVMSYWSEKMTGGDHKGSYASAPLLDDITAIQKLYGANYNTRSDDTVYGFNSNTGRDYYSAKSGGDKLIFTIWDGGGNDTLDFSRYFNDQRITLEEGKFSDVGRLIGNVSIAHGVVIENAYGGYGDDILIGNDADNILKGNAGDDVLYGGAGQDKLWGGTGQDIFVFSAVTDSLYAQPDRIMDFSTGLDRIDLQGLNQNQFGDKFIHFVDEFSGTAGEAMLSYDDDRNLTELLINIGGHQYQPDFKVDIVGTVNVVTDFIV

Flanking regions ( +/- flanking 50bp)

GCAACGAACCTGCAGTTTGAATGAATAAGGGTATATACCGGAGGTATTTTATGGGTGTAGCGGCATACGGCAAGGAAGGCGGGTGGTCATTTATTAATGATATACTGAGTAGTCCCGGGCGGGGTAACGGGCGTTATATTAATAATAAAATCTCATACGATGCATTTGATGCGGGTGATCATATAGCCCGGAAAAATACAACATGGAATGGTATTGATAAAATCGGGCAGCCTGCGGAGGTGACTTACTCTTTCCCGACATGGGAAGGGATGTACAGGAATGCTTTCGGTGATAAAGGATTACAGGGATTTAATGAAAACCAGCAGGCACAGGCACGCTTATCACTACAGTCGTGGTCTGATGTGGCAAACGTTAAATTTACTGAAGTAAATGCAGGGAAGGGCGAAATATATACCAATATTACCTTCGGATATATTAATGATAAATATACCCAGGCTTACGCGATGCTGCCGTTCAGCCGTGATGAATGGGGCAGGCCGTTTACGGATTCACGCGGCTATGATGTGTCCGGTCAGACCTGGTACAGTTCAACGCCGGGTGCGCTGAATATTACACCGGAAAACGGTAATTACGGACGCCTGACAATGACGCATGAAATCGGTCATTCACTGGGATTATTACACCCCGGTGATTATAACGCGGGTCAGGGAAGCCCCTCTTATAAAAATGCCGATTATGCAGAAGATACCCGCCAGTACAGTGTCATGAGTTACTGGAGTGAAAAAATGACCGGCGGCGATCATAAAGGAAGCTATGCTTCAGCCCCTTTGCTGGATGACATTACGGCTATCCAGAAGCTGTATGGTGCTAATTACAACACCCGGTCGGATGATACCGTGTATGGGTTTAACTCTAATACCGGACGTGATTATTACTCCGCCAAAAGTGGTGGTGACAAACTGATCTTCACCATCTGGGACGGCGGGGGCAATGATACGCTGGACTTCTCCCGTTATTTCAATGACCAGAGGATCACCCTGGAAGAAGGCAAATTCTCTGATGTCGGCAGATTGATCGGCAATGTGTCCATTGCACACGGCGTGGTGATTGAGAATGCCTATGGCGGTTATGGTGACGATATTCTGATAGGCAACGATGCGGATAATATCCTCAAAGGCAATGCGGGGGATGATGTTCTGTACGGCGGTGCCGGGCAGGATAAACTCTGGGGCGGTACCGGGCAGGATATTTTTGTCTTTTCTGCCGTAACAGATTCTCTGTATGCGCAGCCTGATCGCATTATGGACTTCTCAACCGGTCTGGATCGCATCGACTTACAGGGACTGAATCAGAACCAGTTTGGTGACAAGTTTATTCACTTTGTGGATGAATTCAGTGGCACAGCCGGGGAAGCCATGCTCAGTTATGATGATGACCGAAACCTGACTGAGCTGCTTATCAATATTGGCGGGCATCAGTATCAGCCTGATTTTAAAGTCGATATTGTGGGTACGGTAAATGTCGTAACTGACTTTATCGTATAACGCAGCAGGCGGGCGCGGCAGTAGTGACTGCGGCGTCCGTACCGTACAGG