Homologs in group_303

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07995 FBDBKF_07995 54.6 Morganella morganii S1 tolC Outer membrane protein TolC
EHELCC_13825 EHELCC_13825 54.6 Morganella morganii S2 tolC Outer membrane protein TolC
NLDBIP_14270 NLDBIP_14270 54.6 Morganella morganii S4 tolC Outer membrane protein TolC
LHKJJB_08580 LHKJJB_08580 54.6 Morganella morganii S3 tolC Outer membrane protein TolC
HKOGLL_08130 HKOGLL_08130 54.6 Morganella morganii S5 tolC Outer membrane protein TolC
F4V73_RS03920 F4V73_RS03920 19.5 Morganella psychrotolerans - Cu(I)/Ag(I) efflux RND transporter outer membrane protein
PMI_RS01340 PMI_RS01340 43.3 Proteus mirabilis HI4320 - TolC family outer membrane protein

Distribution of the homologs in the orthogroup group_303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q03027 1.04e-71 237 36 3 426 3 aprF Alkaline protease secretion protein AprF Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P23598 5.54e-55 192 29 4 438 3 prtF Proteases secretion protein PrtF Dickeya chrysanthemi
Q9K2Y1 1.15e-14 79 21 9 420 1 tolC Outer membrane protein TolC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8G0Y6 6.24e-10 64 24 3 296 1 bepC Outer membrane efflux protein BepC Brucella suis biovar 1 (strain 1330)
P02930 1.21e-07 57 22 8 339 1 tolC Outer membrane protein TolC Escherichia coli (strain K12)
Q54001 8.71e-07 54 20 7 408 1 tolC Outer membrane protein TolC Salmonella enteritidis
Q51397 0.000284 47 24 0 119 1 oprJ Outer membrane protein OprJ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q93PU3 0.000309 46 28 1 117 2 ttgI Toluene efflux pump outer membrane protein TtgI Pseudomonas putida (strain DOT-T1E)
O31101 0.000309 46 28 1 117 2 srpC Solvent efflux pump outer membrane protein SrpC Pseudomonas putida

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12990
Feature type CDS
Gene -
Product TolC family outer membrane protein
Location 210472 - 211812 (strand: -1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_303
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02321 Outer membrane efflux protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1538 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein TolC

Protein Sequence

MHYFSGALCAALLWLLTGTAQAITLSDLWLLALESDPHFQAALKTHEADLAQADAGLAHLLPTAWLSYQNAPQNRLTKREPVAEQQTYRSHSLNVVVTQPLFDYAAYSQYKASLISRPAADSRRQQQVSDLMVRVTKAYLTLAYVQDKQALNRKQEVLHHAQLAAAQRLYQSGEGMLTDIQAQRTQLLLAQAQVADTEPEIEHARRTLADIIGQPQLRADDIARLNSGDFQPPALLPAEYPAWEQRALAENPQILAAQYEVSLAKQAAEVQRGAFMPTAQIFASWSDNKSDSNNMVNQRYESLSAGIHLSVPLFSGGKDMAGMRRVSAQYQTAQHERDAVVQTLLRELSRQYQICLGGRVKLLAYDQAVAAAQLQIQATQKSIAAGQSSQPDMLNARTQYHRVLSEQIKARYDWLEAWILLLQYSNTPDSDTVRRIEGYFSQRAAD

Flanking regions ( +/- flanking 50bp)

CAGACCGGTAACCGATCGCCTGCATTCCGCACTGGCAGAGGAGTAACAGCATGCACTATTTTTCAGGCGCACTCTGTGCGGCATTGTTGTGGCTGCTGACCGGGACGGCACAGGCAATCACACTGTCTGATCTCTGGCTGCTGGCGCTGGAGTCAGATCCCCATTTTCAGGCAGCACTGAAAACCCATGAAGCAGATTTAGCTCAGGCGGATGCCGGGCTGGCACACCTTCTGCCGACAGCCTGGCTGAGTTATCAGAATGCGCCGCAAAACCGTCTGACAAAACGGGAGCCGGTTGCGGAGCAGCAGACTTACCGCAGCCACTCACTGAATGTGGTGGTGACGCAGCCGCTGTTTGATTATGCGGCGTACAGTCAGTATAAAGCGTCGCTTATCAGCCGTCCGGCAGCGGACAGCCGCAGGCAGCAGCAGGTATCTGACCTGATGGTCAGAGTGACAAAGGCATATCTGACACTCGCTTATGTTCAGGATAAACAGGCACTGAACCGGAAACAGGAAGTATTGCATCACGCACAGCTGGCAGCAGCGCAGCGGCTTTATCAGTCGGGAGAAGGTATGCTGACTGATATTCAGGCTCAGCGGACACAGTTGTTACTGGCTCAGGCGCAGGTGGCGGATACAGAGCCGGAGATTGAACATGCCCGCCGTACCCTGGCAGACATTATCGGTCAGCCGCAATTGCGGGCCGATGATATTGCCCGGCTGAATTCGGGGGATTTTCAACCACCGGCGCTGTTACCGGCAGAATACCCGGCATGGGAGCAGCGGGCGCTGGCAGAAAACCCGCAGATCCTGGCGGCACAGTATGAAGTGAGCCTGGCAAAACAGGCAGCAGAAGTACAGCGCGGGGCGTTCATGCCCACCGCGCAGATCTTTGCATCCTGGTCTGATAATAAATCTGACAGTAATAATATGGTGAATCAGCGTTATGAATCACTCAGTGCGGGTATTCATCTCTCTGTTCCGCTGTTCAGCGGCGGTAAAGATATGGCAGGAATGCGCCGTGTGTCGGCACAGTATCAGACCGCGCAGCATGAGCGGGATGCGGTGGTGCAGACGCTGCTGCGTGAGTTATCACGCCAGTATCAGATTTGCCTGGGCGGCAGGGTAAAACTGCTGGCTTATGACCAGGCGGTGGCGGCGGCACAATTGCAGATTCAGGCGACACAAAAAAGTATTGCAGCCGGACAAAGCAGTCAGCCGGATATGCTTAACGCGCGGACACAGTATCACCGGGTGCTGAGTGAGCAGATAAAAGCCCGCTACGACTGGCTGGAGGCATGGATTTTGTTATTGCAGTACAGTAATACGCCGGACAGTGATACTGTCCGGCGTATTGAGGGGTATTTCAGTCAGCGGGCGGCAGATTAACATGCAGGCAGTCAATCAGGCGGATGCTTCCCAGCCAGGCAGAGGCCAGA